KEGG   Camelina sativa (false flax): 104716543
Entry
104716543         CDS       T05044                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
csat  Camelina sativa (false flax)
Pathway
csat03020  RNA polymerase
csat03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104716543
  09124 Replication and repair
   03420 Nucleotide excision repair
    104716543
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csat03021]
    104716543
   03400 DNA repair and recombination proteins [BR:csat03400]
    104716543
Enzymes [BR:csat01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     104716543
Transcription machinery [BR:csat03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     104716543
DNA repair and recombination proteins [BR:csat03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      104716543
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R
Other DBs
NCBI-GeneID: 104716543
NCBI-ProteinID: XP_010432227
Position
10:2144301..2152788
AA seq 1836 aa
MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI
DRKVKCDTCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK
FKQAMKIKNPKNRLKKILDACKNKTKCDGGDEMDDVHNKDTDEPVKKSRGGCGAQQPKLT
IEGMKMIAEYKIPRKKTDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA
RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII
SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII
RDDGQRLDLRYLKKSSDHHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI
NLLRYSAWHSDSETGFITPGDTQVRIERGELLAGTLCKKALGTSNGSLVHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEKK
LDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYQKLETDRF
QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV
PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED
VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI
MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDVEGGFK
TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD
CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPTSGT
PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSGYSPTSPVYSPTS
PTYSPTSPTYSPTSPTYSPSSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPAYSPTSPGYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSLAYSPS
NARLSPSSPYSPTSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGYSP
TLPGYSPSSTGQYTPHEGDKNDKTGKDVCKNDKSNP
NT seq 5511 nt   +upstreamnt  +downstreamnt
atggatacacgttttccgttctctccggccgaggtttccaaagtccgggtggtccagttt
ggcatcctcagccccgatgagatcaggcaaatgtctgttatacatgttgagcatagtgag
acgacagagaagggtaaacctaaggtgggagggttgagtgatatccggcttggtacgatt
gatcggaaggtgaagtgtgatacatgtatggctaatatggctgagtgccctgggcacttt
ggccatctcgagctcgccaagccaatgtatcatgtcggttttatgaagactgtgttaagt
atcatgagatgtgtctgcttcaattgctccaagattttagctgatgaggaggagcacaag
tttaagcaggctatgaagataaagaatcccaaaaacaggcttaagaagattctggatgct
tgcaaaaacaagaccaaatgtgatggtggtgatgaaatggatgatgtccataacaaagac
acggacgaacctgtaaaaaagagccgtggtggatgtggtgcacagcaaccaaagctgact
attgaaggtatgaagatgattgcagagtacaaaattccaaggaagaaaaccgacgagccg
gatcagcttccagagcctgcagaaaggaaacagacacttggtgctgatagggttttgagt
gttttaaagaggattagtgatgcggattgccaactattagggttcaaccctaagtttgct
cgccctgactggatgattcttgaagtcctccctattcctccacctcctgtcagaccatct
gtaatgatggatgccacttccagaagtgaggatgacttgacccatcagctagccatgatt
attcgacacaatgagaacttgaaaagacaggaaaaaaatggggcgccagctcatattata
tcagagtttacacagctcttgcagtttcatatagctacctattttgataatgagttacct
ggacagccaagggctactcaaaaatcagggaggcctattaagtcaatatgtagtaggctg
aaggcaaaggaaggcagaatcaggggaaacttgatgggaaaacgtgttgatttttcggca
cgtactgttattacaccagatccaacaattaatatcgatgagcttggtgtaccgtggagt
attgctctgaatctcacatacccagaaacagtgactccatataacattgaaagattaaag
gagctcgttgattatgggccacatcctccacctggcaagactggagcgaaatatatcatt
agggatgatggccaaaggctagatctccggtacctgaaaaagagcagtgatcatcatttg
gaacttggatacaaagttgagcggcatttacaggatggtgattttgttctgtttaatcgt
caaccaagtctgcacaaaatgtcaatcatgggtcacaggattcggattatgccatattcc
actttccgtctgaatttatctgtcacttcgccttacaatgctgatttcgatggggatgag
atgaacatgcatgtaccacaatcattcgagaccagagccgaggtgttagagctgatgatg
gttcctaaatgtattgtgtctccccaggcgaatcggcctgtgatgggaattgttcaggat
actctactagggtgccgtaaaattacaaaaagagataccttcatagagaaggatgtattc
atgaatacgcttatgtggtgggaagatttcgacgggaaagttccagctcctgcaattctg
aagccacgtcctctttggactggcaaacaagtttttaatcttatcatcccaaaacagata
aatctgttgaggtactctgcctggcactcagattcagagactggattcataactccgggg
gatactcaagtgcgaattgaaagaggggaacttcttgccggaactctttgcaaaaaggcc
cttggtacatctaatggaagtctcgtgcatgtcatttgggaagaggttggtcctgatgca
gccaggaaattccttggtcatactcagtggcttgtcaattactggcttctgcagaatggt
tttaccattggaattggtgacacaattgctgattcatcaacgatggagaaaattaatgaa
actatttctaacgcaaaaactgctgtgaaagatcttatccggcagttccaggaaaagaaa
ttggaccctgaacccggccgaactatgacagagacatttgagaacagggttaatcaggtc
ttgaataaagctcgtgatgatgctggaagtagtgctcaaaagagtttagcagaaaccaat
aaccttaaggcgatggtgacagcaggatcgaaaggaagtttcattaatatttctcaaatg
acagcgtgtgtcggccagcaaaatgttgaagggaagcggattccatttggatttgatggt
cgaacattgccacatttcaccaaagatgattatggtcctgagagtcgtggatttgtagag
aattcgtaccttcgtggtctgacacctcaagagttctttttccatgccatgggaggaagg
gaaggtcttattgatactgctgtgaagacatcagaaactggatacatccagaggcgtttg
gtaaaggctatggaggatattatggttaaatatgatgggacagtccggaactcgttgggt
gatgttattcaatttctctatggtgaagatggtatggatgctgtatggattgaatcacag
aagctggattccttgaaaatgaagaaatcggagttcgataggactttcaagtatgagatc
gacgatgaaaactggaatcctacatacttaagtgatgaacatctcgaggacttgaaaggg
attcgggagttgcgtgatgtatttgatgcggaatatcagaaacttgagactgacagattc
caactcgggacagaaattgcaacaaatggtgatagcacttggccattgcctgttaacatc
aagaggcatatctggaatgcgcagaagactttcaagatcgacttgcgcaagatttcggat
atgcaccctgttgaaattgtagatgcggttgataaactacaagagaggctgttggttgtt
cctggtgatgatgcattgagtgtggaagcacagaaaaatgcaacactgttctttaacatt
ttgcttcgcagcactcttgctagtaaaagagtattggaggaatacaagctcagccgcgag
gcttttgagtgggtaattggtgaaatagaatcgagatttttacaatcgctagtggcccca
ggggaaatgattggttgtgttgctgctcaatcaattggagaacctgctacgcagatgact
cttaacaccttccattatgctggtgtcagtgcaaagaacgttacactcggtgttcccagg
ttgcgtgaaattattaatgtagctaaaaggatcaaaacaccgtccctatcagtctatctc
acaccggaggctagcaaatcaaaagagggggctaagactgttcagtgcgctttggagtat
actactctcaggagtgtcactcaagctacagaagtctggtatgacccagatccaatgagt
actatcattgaggaggacttcgaatttgtgaggtcctactatgaaatgccggatgaagat
gtttctccggataaaatatctccttggctgcttcgtatagagttgaatcgcgagatgatg
gttgataagaaattgagtatggcggatattgcggaaaagatcaaccttgagtttgatgat
gatctgacttgcatattcaatgatgataatgcccaaaaactgatccttcgaattcgcatt
atgaacgatgaggggcctaagggagaattgcaagatgaatcagctgaagatgatgttttc
cttaaaaagattgagagcaacatgctgacagaaatggcgctcagaggtattccagacatc
aacaaagttttcattaaacaagttagaaaaagcaggtttgatgtggagggtggatttaag
acatctgaagagtggatgttagatacagaaggtgttaatctcttagctgttatgtgccac
gaagatgtggatccaaagaggacaacaagcaatcacttgattgaaattattgaagttctc
ggaatcgaggcagttcgccgtgctttgttggatgaactccgggttgtgatttcctttgat
ggctcttatgtgaattaccgccatcttgccatcttgtgtgataccatgacatatcgcggt
catctaatggctatcactcgacatggtatcaatagaaatgacactgggcctctgatgaga
tgctcttttgaagaaacagttgatattctgttagatgctgcagcttatgctgagacagac
tgcttgcggggtgttactgagaatataatgctgggtcaacttgcaccaattggaacagga
gattgtgaactgtatctgaatgatgagatgttgaagaatgctattgaactccagctccct
agctatatggatggtctggaatttggaatgactcctgctcgatcaccaacatcaggcact
ccttaccatgaaggcatgatgtccccgaactacctgttgagtccaaatatgcgtttgtca
ccaatgtcagacgcacagttttctccatatgttggcggaatggccttttcaccttcttca
tctccaggctatagcccgtctggatacagtcctacttcacctgtatatagcccgacttcg
cctacctacagccccacttcgcctacctacagtcccacttcgcctacctacagtcccagt
tctcctgcctatagtccaacaagccctgcttattctcctacaagtccttcctattctccc
acctctccgagctacagccccacgtctccaagctatagtccaacgtctccaagctacagc
ccaacatccccaagttacagcccgacttcgcctgcttacagcccaacatcacctgcttat
agcccgacttcacctgcatacagtccgacctctccttcttacagtccaacttcgccatct
tacagtccaacatcgccttcttacagccctacctcaccatcctatagtcccacatcacca
tcttatagtcctacttcacctgcatacagccccacttcacctggctacagccccacttca
cctggctacagcccaacttcaccaagttacagtccaacatcaccaagctatggtcctacg
tctccaagctacaaccctcagtctgctaaatatagcccatctcttgcttactctcctagc
aatgcaagactatcaccatctagtccctacagtcctacatctccaagctacagcccgaca
tcgccatcatactcacccacatctccatcttattcaccttcgagtccaacatacagtccc
agcagcccttacagctcaggagcaagccctgactacagcccaagcgcaggctactcgcca
acacttccgggttattcaccatcatccacgggtcagtatacaccacatgagggcgataaa
aatgacaagactgggaaagatgtctgtaagaatgataaaagcaacccttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (8)   
   Pfam (8)   
All databases (26)   

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