KEGG T05044: 104736107

Camelina sativa (false flax): 104736107

Entry

104736107         CDS       T05044

Name

(RefSeq) dicer-like protein 4 isoform X1

K11592

endoribonuclease Dicer [EC:3.1.26.-]

Organism

csat Camelina sativa (false flax)

Brite

KEGG Orthology (KO) [BR:csat00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:csat03036]
    104736107
Chromosome and associated proteins [BR:csat03036]
Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    104736107
   microRNA pathway
    RISC loading complex
     104736107

SSDB

Motif

Pfam:

Ribonuclease_3 Ribonucleas_3_3 Dicer_dimer DEAD Helicase_C ResIII DND1_DSRM dsrm PAZ IstB_IS21

Other DBs

NCBI-GeneID:

104736107

NCBI-ProteinID:

XP_010454337

Position

13:complement(9017719..9028293)

AA seq 1730 aa
MREPVDLSLTTTPSKILGKRDRREKNKLLEKNKNKKAKKQRGNCNFFAEEEATKPKQQIH
PIPPLTTTTLAAAVTPLHPSSLTMPYCEIGDDFGSQSLDCDADASSDIHLSSSSSSSFSS
FSSSSSSSLFSAPGACTDDLSAKMEKDPRKIARRYQVELCKKAVDENIIVYLGTGCGKTH
IAVMLIYELGHLVLRPNKSVCIFLAPTVALVEQQAKVVSDSINFKVAVHCGGKRTVKSHS
EWEKEISENEVLVMTPQILLHNLQHCFIRMESISLLIFDECHHAQQLSNHPYAEIMKVFY
KSESLQQPRIFGMTASPVVGKGSFQSENLSKSINSLENLLNAKVYSVESNAQLDGFVSSP
LVKVYYYRSAMTDVSQSTIRYETMLEDIKQRCLASLKLQTDTHQTQNLLNMKRLLKRTHD
NLIYTLVNLGIWGAIQAAKIQLNSDHDVQEEPVGENQKLKICDTYLSLAAEVLSSGVAKD
ENASELLSLAALKEPLFSRKLVQLIEILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLE
LLRSWKSDFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIR
YDLPETVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIEHFRVNEDRMNLEITSRTSEE
TCPRHDEELYKVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFHFKPGDEFGGTIC
RIILPANAPISEVVSSVRPSTEAAKKDACLKAVYELHNLGVLNDFLLPDSKDEIEVELSD
DEFDFDNVEGEGCSRGELYEMFVPGLFKQKWDPTTSCVNLHSYYIRFVPHPADRLYRKFG
FFIKSPLPVEAETMDFNLHLAHQRSVSVMIVPSGVTTFDNNEIRLAEIFQEVALKVLFER
QELIPEFVPLELQYSLRTSKSTFYLLLPISLHGAESVISVDWVTIRSCLASPIFKIPSVL
VEDIVPPTGSHLKLANGCWNIDDVKNSLVFTTHNKQFYFVADICHGRNGFSPVKKSSTKS
HMESTYDLYGVELKHPGQPLLQVKPLFHVRNLLHNRMQKNLEPQELAEYFIEIPPELSQL
KIKGFSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEALTTEKC
HEHFSLERLEVLGDAFLKFAVSRHLFLLHDWLDEGELTRRRSNVVNNSNLCRLAIKRNLQ
VYIRDQAFDPNQFFAFGHPCRVACDEGMIKEVHSLNRGPGLSDSDTGEIRCSKGHHWLYK
KTIADVVEALVGAFLVDSGFKGAVKFLRWIGVNVDFESVQVRDACIASRRYMPLTTRNNL
EALENQLEYTFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPTL
KPGQLTDLRSLSVNNKALANVAVNFSLKRFLFCESIYLHEAIDDYTNFLAASPLASGQPE
GPRCPKVLGDLVESCLGALFIDCGFNLNHVWTMMLSCLDPVKNLSNLQISPVKELIEICQ
SYKWDREISATKKDGAFSVELKVTKKGSCLTASATGRNKRESTKKAAQLMITYLKAREHI
TAANPLEDVVKNSIRNEAKLIGYNEEPIDVMELDGLDVENLNLQENFGENSKISSSYLIR
RGLPQAPSKTEDRLPQKTIKEAGGSSSKTAKSLLHETCVANCWKPPNFECCEEEGPGHLK
SFTYKVIVEVEDAPNMTLECYGDARPTKKGAAEHAAQAAMWCLKHSGFLS

NT seq 5193 nt +upstreamnt +downstreamnt
atgcgtgaacctgttgacttgagcttgacgaccactccctcgaagattttggggaagcga
gacagaagagagaaaaataagcttttagaaaaaaacaaaaacaaaaaagcgaaaaagcag
cgtggaaattgtaatttcttcgctgaggaggaggcaacaaagccaaaacagcaaatacac
ccaattcctcctctcaccaccaccactcttgctgctgctgtcactcctcttcatccttct
tctttgaccatgccgtactgtgaaatcggcgacgattttggctcacagtcactcgactgt
gacgccgatgcttcttccgacattcacctctcttcttcttcttcttcctctttctcttcg
ttttcttcttcttcttcttcgtctttgttctcggcgcctggtgcttgtacggatgacctc
tcggcgaagatggagaaagaccctaggaaaatcgccaggaggtatcaggtggagctgtgt
aagaaagcagtggatgagaacattattgtttacttgggaacaggttgtgggaagactcac
attgcggtgatgcttatatatgagctcggtcacttggttcttcgtcctaacaaaagtgtt
tgtatttttcttgctcccaccgtggctttggtcgaacagcaagccaaggtcgtatcagac
tctatcaacttcaaagttgcagtacattgtggaggcaagaggactgtgaagagccattct
gaatgggagaaagagatttcagagaatgaggttcttgttatgactccacaaatacttctg
cataacttacagcactgtttcatcaggatggagtctatctcccttctaatatttgatgag
tgtcaccatgctcaacaactaagcaaccatccttatgcggaaatcatgaaggttttctat
aaatcagaaagtttacaacagcctcgaatatttggaatgactgcatctccagttgttggc
aaagggtcttttcaatctgagaatttatcgaaaagcataaatagccttgaaaatttactc
aatgccaaggtttattcagtagaaagcaatgcccagctggatggttttgtttcatctccg
ttagtcaaagtatattattatcggtcagctatgactgatgtatctcaatcgaccatcaga
tatgaaaccatgctggaggacatcaaacagcggtgcttggcatcacttaagctgcagact
gatacccatcaaacacaaaacctcctaaatatgaaaaggcttctcaaaagaactcatgat
aatctcatatatactctggtgaatcttggcatctggggagcaatacaggctgctaaaata
caattgaatagtgaccatgatgtacaagaagagcctgtgggagagaatcagaagttaaag
atatgtgatacatatctttctctggctgctgaggtcctctcctctggtgttgctaaagat
gaaaatgcatctgaactcctcagcttagcggcgttgaaggaaccattattctctagaaag
ctagttcaattgattgaaatcctttcggtattcaggctagagccacacatgaagtgtata
atatttgtcaatcggattgtaactgcaagaacgttgtcatgcatactaaataacttggaa
ctgctacgatcttggaagtctgatttccttgttggacttagttctggcctaaagagcatg
tcaaggaggagtatggaaacaatacttaaacgattccaatctaaagagctcaatttactg
gttgccactaaagttggtgaagaaggccttgatattcagacatgttgtcttgtgatccgt
tatgatttaccagagactgttaccagcttcatacagtccaggggccgtgctcgaatgcct
cagtccgaatatgcctttttagtggacagcggaaacgagaaagagatggatctaattgaa
cattttagagtaaatgaagatagaatgaatctggaaattacttccagaacgtcagaggaa
acttgtcctagacatgatgaggagttatacaaagttcatgagacaggagcttgtatcagt
ggtggaagtagcatctcccttctctataaatattgttctaggcttccacatgatgagttt
tttcagccaaagccagagtttcatttcaaacctggtgacgaatttggtggaactatctgt
cgcataattttacctgctaatgctcctataagtgaagttgtcagttcggtacgaccttca
actgaagctgccaaaaaggatgcttgtctaaaggctgtgtacgagttgcacaacttgggt
gtgcttaacgattttctattgccagattcaaaggatgaaattgaggttgaattgtcagat
gatgaatttgattttgataacgtcgaaggtgaaggctgttcacgaggtgaactgtatgag
atgtttgttcctggcttgtttaaacaaaagtgggatcctacaacaagttgtgtcaatctt
cattcttactacataaggtttgtgcctcatcccgcggataggctctacagaaagtttggt
tttttcattaagtcacctcttcccgttgaggctgagactatggatttcaatcttcacctt
gctcatcaaagatctgtaagtgtgatgattgttccatcaggagtcaccacattcgacaac
aatgagataaggctagcagagatttttcaggaggttgccctgaaggttctttttgagcgg
caggagctcattccggaatttgttcccttagaactgcaatactctcttagaacaagcaaa
tctaccttctaccttcttcttccaatcagtctgcatggtgcagaaagtgttatatctgta
gattgggtgactatcagaagctgcttggcatcaccaatctttaagattccatctgtttta
gtggaagatatagttcctcctacaggctctcatctaaagctcgcaaatggctgctggaat
attgatgatgtgaagaacagcttggtttttactacccacaataaacaattttactttgtt
gctgatatctgccatggaagaaatggttttagtcctgttaagaaatcaagcaccaaaagc
catatggagagcacatatgatttgtatggcgtggaactcaagcatcctggacagccactc
ttgcaggtgaaaccactttttcatgttcggaacttgcttcacaaccgaatgcagaagaat
ttggaaccacaagaacttgcggaatacttcatagagattcctcccgagctttctcagtta
aagataaaaggattttctaaagacatcggaagctcgttatccttgctaccgtcaatcatg
catcgtatggaaaatttacttgtggctatcgaactgaaacatgtgctgtctgcttcgatc
cctgagatagctgaagtttctggtcacagagtactcgaagctctcacaacagagaaatgt
catgagcacttttctcttgaaaggcttgaggtgcttggtgatgcattcctcaagtttgcg
gttagccgacacctttttctactccatgattggcttgatgaaggagagttgactcgaaga
cgctctaacgttgttaacaattccaatttgtgtaggcttgcaatcaagagaaatttgcag
gtctacatccgggatcaagcattcgatcctaatcagttctttgcatttggccatccatgc
agagtagcctgtgacgaaggaatgataaaagaggttcattccttgaataggggtcctggg
ctttcggattcagatactggtgaaatcagatgtagcaaaggccatcattggttgtacaag
aaaacaattgctgatgtggttgaggctcttgtgggagctttcttagttgacagtggcttc
aaaggtgccgtgaaatttcttaggtggattggtgtaaatgttgattttgaatccgtgcaa
gtacgagatgcttgtattgcaagcaggcgctacatgccactcactactcgcaataatttg
gaggcccttgaaaaccagcttgaatatacgttcctccacaaaggtctacttgtacaagcc
tttatccatccatcttacaacaggcatggaggaggctgctaccagagattggagtttctt
ggggatgctgttctggactacttgatgacatcctattttttcacagtcttcccgacactg
aaacctggtcaactgacagatctaagatcgctctcagtaaataataaggcgctggcaaat
gttgctgtcaatttttcgctaaagagatttctattttgcgagtccatttatctccatgaa
gcaatagatgattacaccaatttcctggcagcatcaccattggcaagtggacaacctgaa
ggtccaagatgcccaaaggttcttggtgacttggtagaatcctgtttgggggctctcttc
attgattgtgggttcaacttgaatcatgtctggactatgatgctatcatgtctagatcca
gtcaaaaacttgtctaacctgcagattagtcctgtaaaggaactgattgaaatttgccag
tcttacaagtgggatcgggaaatatcagcgacgaagaaggatggtgctttttctgttgaa
ttaaaagtgaccaagaaaggtagttgccttacagcttctgcaactggtcggaacaaaaga
gagagcacaaaaaaggctgcacagctgatgattacatatctgaaggcacgtgagcacata
acagcagcaaatccattggaagatgttgtgaagaatagcatcagaaatgaagctaaatta
attggctacaatgaagagcctatagatgttatggaacttgatgggctggacgttgaaaac
cttaatctccaagaaaattttggcgagaatagtaaaataagcagctcatacctcatcagg
cgaggtctcccccaggcaccatctaaaacagaagacaggcttcctcaaaagaccatcaag
gaagcaggtggatcaagcagcaaaaccgcaaaatccctcttgcatgaaacatgtgttgct
aactgttggaagccaccaaactttgaatgttgtgaggaggaaggaccaggccacctgaaa
tcattcacatataaggtaatcgtggaagttgaagatgcccccaacatgacattggagtgt
tatggtgatgctagaccaacaaagaaaggtgcagcagagcatgctgcccaagctgctatg
tggtgcctcaagcattctggattccttagctga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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