KEGG   Camelina sativa (false flax): 104736877
Entry
104736877         CDS       T05044                                 
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
  KO
K15172  transcription elongation factor SPT5
Organism
csat  Camelina sativa (false flax)
Pathway
csat03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    104736877
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csat03021]
    104736877
   03019 Messenger RNA biogenesis [BR:csat03019]
    104736877
Transcription machinery [BR:csat03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     104736877
  RNA polymerase I system
     104736877
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     104736877
SSDB
Motif
Pfam: KOW Spt5-NGN Spt5_N DUF4438
Other DBs
NCBI-GeneID: 104736877
NCBI-ProteinID: XP_010455259
Position
13:16091481..16105856
AA seq 1040 aa
MPRNRDEDDDVDEDYEGLDLEEEEEEEEEEERGRGGGGGSRRKRGRSSFIDDYAEEDSQE
EDDDDDEDYGSRGGGKGGAAASKRKKPSASIFLDREAHQVDDEDEEEEEDGEDDFIVDAG
TDLPDERGDRRYERRFLSRDENDEDVEDLERRIQERFSRHHEEYDEEATDVEQQALLPSV
RDPKLWMVKCAIGREREVAVCLMQKFIDRGADLQIRSVVALDHLKNYIYVEADKEAHVKE
AIKGMRNIYANQKILLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDN
VRQRVTVKLIPRIDLQALASKLDGREVSKKKAFVPPPRFMNIDEARELHIRVERRRDPMT
GDYFENIGGMLFKDGFLYKTVSLKSITVQNVTPTFDELEKFNKPSENGEGDFGGLSTLFA
NRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVLIRSEMKGLPDPLAVNEKELCKYFE
PGNHVKVVSGTHEGATGMVVKVDQHVLIILSDTTKEHVRVFADHVVESSEVTTGVTKIGD
YELHDLVLLDNLSFGVIIRLENEAFQVLKGVPDRPEVALVKLREIKCKIEKKFNVQDRYK
NVIAVKDDVRVIEGPSKGKQGPVKHIYKGVLFIYDRHHLEHAGFICAKCTSCIVVGGSRS
GANRNGGDSFPRYGNFKAPAPVPSSPGRFQRGRGGYNSGGRHRGGRGGGDDSLLGTTVKI
RLGPFKGYRGPVVEVKGNLVRVELEMKIVTVDRDAISDNVATTPFRDTSRYSMGSETPMH
PSRTPLHPYMTPMRDSGATPIHDGMRTPMRDRAWNPYTPMSPSRDSWEDGNPGSWGTSPQ
YQPGSPPSRAYEAPTPGSGWASTPGGSYSDAGTPRDHGSAYANAPSPYLPSTPGQPMTPS
SASYLPGTPGGQPMTPGTGLDVMSPVIGGDAEAWFMPDILVDIHKAGEDSDVGVIRDVSD
GTCKVSLGSSGEGDTIMALPSELEIVPPRKSDRVKIVGGQFRGSTGKLIGIDGSDGIVKI
DDNLDVKILDLAILAKFVQP
NT seq 3123 nt   +upstreamnt  +downstreamnt
atgcctcgaaacagggacgaagacgatgatgttgacgaagattacgaaggattggattta
gaggaagaagaggaggaagaagaagaagaggagagaggaagaggcggtggcggcggttct
agacggaagagaggaagatcaagttttattgatgattatgcggaggaggattctcaggaa
gaagatgacgatgatgatgaagattatggtagccgtggtggaggtaaaggaggtgcagca
gctagtaagagaaagaagccttctgcttctattttcttagaccgagaagctcaccaggtt
gatgatgaggatgaagaggaagaagaagatggagaagacgactttatagtggatgctgga
acagaccttccggatgagcgtggtgatagacggtatgaacggaggttcctttctcgtgat
gaaaatgatgaggatgtggaagatctcgagagaagaattcaagagcggttctctaggcat
catgaagaatatgatgaagaagctacagatgtagaacaacaagcgcttttgccatcagtt
cgtgatccaaaattgtggatggtgaaatgtgcgattggccgcgaaagggaggttgctgtt
tgtcttatgcaaaagttcatagatcgaggagcagatctgcagatcagatctgttgttgcc
cttgaccatcttaaaaattatatatatgttgaagcagacaaggaagcacatgtgaaagag
gcaatcaagggcatgaggaatatatatgctaatcagaagatcttacttgtccccataaga
gaaatgacggatgttctttctgttgaaagcaaagcaattgatctatctcgggatacatgg
gttagaatgaaaattgggacgtataaaggtgatcttgctaaggtagttgatgttgataat
gtgcgccagagggtcacagtcaagttaatcccaagaatcgatctgcaggcactagccagt
aaactggatggaagagaagtttcaaagaaaaaagcctttgttccacctccacggttcatg
aacattgatgaagctagggaattgcacatacgtgtagagcgacggcgtgatcccatgacg
ggtgattactttgaaaatattggtgggatgcttttcaaagatggtttcctgtacaaaaca
gtatcattgaagtccattactgttcagaatgttacaccaacttttgacgaacttgaaaaa
tttaataaaccaagtgaaaatggagagggcgactttggtggtctgtcaactttattcgca
aacagaaagaaaggtcatttcatgaagggtgatgcggttattgttatcaagggggattta
aaaaacttgaagggttgggttgagaaagtagatgaagaaaatgtccttatcagatcagaa
atgaaaggtcttcctgatcctcttgctgtaaatgagaaagagctctgcaagtactttgaa
cctggaaatcatgtgaaagtggtttctgggacccatgaaggagcaacaggcatggttgtc
aaagttgatcaacatgtcctgatcatattatctgacacaaccaaagaacacgtccgtgtg
tttgctgatcatgttgttgagagctcagaagtgacaactggtgttaccaaaattggggac
tatgaacttcatgatcttgtgctgctggataacctgagttttggagtaattatacgacta
gagaatgaagcttttcaggttcttaaaggggttcctgacagacctgaggttgctcttgtc
aaactcagagaaatcaaatgcaaaattgagaagaaatttaatgttcaagatcgctacaaa
aatgtcattgctgtgaaagatgatgtcagagtcattgagggtcctagcaaaggtaaacaa
ggtcctgtaaagcatatttacaaaggagtcctatttatatatgatcgacatcatcttgag
catgccgggtttatctgcgctaaatgcacatcatgcattgttgttggtggatcacgttct
ggtgctaatagaaatggtggtgattcttttccaaggtatggcaatttcaaggcgcctgct
ccagtaccctcatctccaggaagattccagcgcggcagaggcggatataactctggaggg
aggcacaggggtggaagaggagggggggacgattctttgttgggtactactgttaaaatc
cgtctagggcctttcaaggggtataggggacctgtagtagaagtgaaaggaaatttagtg
cgtgtagaacttgagatgaagattgtaacagttgatcgggatgcaatatcagataatgtt
gcgacaacaccgtttagagatacatctcggtatagtatgggaagcgaaacacctatgcat
ccttctcggactccacttcatccttatatgactccaatgcgggactctggagctacaccc
atccatgatggaatgaggacacccatgcgtgatagagcttggaatccttacacgcctatg
agtccatctagggatagctgggaagacggaaatccgggatcttggggaacaagtcctcaa
tatcagccgggaagtcctccttcacgggcatatgaagcaccaactcctggctcaggatgg
gctagtactcctggtggtagttactcggatgcagggacacctagggaccatggttcagct
tatgctaatgccccaagcccttacctaccatcgacacctggacaaccgatgacaccaagc
tcggcttcatacctacctggaactcctggaggacaaccaatgactccaggaactggcctg
gatgtcatgtctcctgttataggtggggatgctgaagcatggttcatgcccgatattttg
gttgacatacacaaggctggagaggacagcgatgtgggcgtcatccgagatgtttcggat
ggaacgtgtaaagtatctctcgggtccagtggtgaaggtgacactataatggccctccca
agcgaactggagatagtacctccgaggaagagtgaccgtgtcaaaatagttggtgggcaa
tttcgtgggtctactggtaagcttatcggaatcgacggttcagacggtatcgttaagata
gatgataatcttgacgtcaagattctggacctggccatattagccaaatttgtgcaaccg
tga

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