KEGG   Camelina sativa (false flax): 104737312
Entry
104737312         CDS       T05044                                 
Name
(RefSeq) THO complex subunit 4A
  KO
K12881  THO complex subunit 4
Organism
csat  Camelina sativa (false flax)
Pathway
csat03013  Nucleocytoplasmic transport
csat03015  mRNA surveillance pathway
csat03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104737312
  09122 Translation
   03013 Nucleocytoplasmic transport
    104737312
   03015 mRNA surveillance pathway
    104737312
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104737312
   03041 Spliceosome [BR:csat03041]
    104737312
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104737312
    TREX complex
     104737312
Spliceosome [BR:csat03041]
 Complex C
  Other components
   EJC/TREX
    104737312
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    104737312
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3
Other DBs
NCBI-GeneID: 104737312
NCBI-ProteinID: XP_010455759
Position
2:24877844..24879399
AA seq 244 aa
MSTGLDMSLDDMIAKNRKSRGGAGPARGSGSGSGSGPGPTRRNNPNRKSNRSAPYQSAKA
PESTWGHDMFSDRSEDFPSRSSRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKR
YTVHFDRSGRSKGSAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEILGTNLQSAAAPSGR
PANGNSNGAPWRGGQGRGGQQRGGGRGGGGGRGRRPGKGPAEKISAEDLDADLDKYHSGD
METN
NT seq 735 nt   +upstreamnt  +downstreamnt
atgtcgactggattagatatgtctctcgacgacatgatcgccaagaaccgtaagtctcgt
ggtggagccggccccgcccgtggatctggatctggttccggatccggaccgggtccaact
cgtcgcaacaaccctaatcggaaatcaaaccgatctgctccataccaatcagccaaggcg
ccggagtccacctggggtcacgacatgttctccgatagatctgaagatttcccttcccgg
tcaagccgttcttccgccggaatcgaaactggaaccaagctttacatctccaatttggat
tacggtgtcatgaacgaagatatcaaggaattatttgctgaagttggggaacttaaacgc
tacacagtccattttgataggagtggaagatctaagggaagtgctgaagtagtgtattct
cggcgtggtgatgcactcgcagctgtgaagaagtataacgatgttcaactggatggaaaa
cccatgaagatagagattttgggaaccaatcttcaatccgctgcagcaccttctggtaga
cctgcaaatggaaactccaatggtgctccatggagaggaggacaagggagaggtggtcaa
caacgtggcggtgggcgaggtggtggtggtggccgtggtaggcgacctggtaagggccct
gcagagaagatatctgctgaagatcttgatgcagatctcgacaagtatcattctggagat
atggagacaaactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system