KEGG   Camelina sativa (false flax): 104768412Help
Entry
104768412         CDS       T05044                                 

Definition
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37e isoform X3
  KO
K03283  heat shock 70kDa protein 1/2/6/8
Organism
csat  Camelina sativa (false flax)
Pathway
csat03040  Spliceosome
csat04141  Protein processing in endoplasmic reticulum
csat04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104768412
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    104768412
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    104768412
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:csat01009]
    104768412
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csat03041]
    104768412
   03009 Ribosome biogenesis [BR:csat03009]
    104768412
   03110 Chaperones and folding catalysts [BR:csat03110]
    104768412
   04131 Membrane trafficking [BR:csat04131]
    104768412
   03051 Proteasome [BR:csat03051]
    104768412
   03029 Mitochondrial biogenesis [BR:csat03029]
    104768412
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:csat04147]
    104768412
Protein phosphatases and associated proteins [BR:csat01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-5
    PP5-interacting proteins
     104768412
Spliceosome [BR:csat03041]
 Complex B
  Other components
   Prp19 complex
    104768412
 Complex C
   Prp19-CDC5 complex
    104768412
Ribosome biogenesis [BR:csat03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    104768412
Chaperones and folding catalysts [BR:csat03110]
 Heat shock proteins
  HSP70 / DNAK
   104768412
Membrane trafficking [BR:csat04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Other core components
    104768412
 Autophagy
  Chaperone mediated autophagy (CMA)
   Chaperones
    104768412
Proteasome [BR:csat03051]
 Eukaryotic proteasome
  Assembling factors
   Other assembling factors
    104768412
Mitochondrial biogenesis [BR:csat03029]
 Mitochondrial protein import machinery
  Endoplasmic reticulum membrane and cytosol
   Other ER-memrane and cytosol factors
    104768412
Exosome [BR:csat04147]
 Exosomal proteins
  Proteins found in most exosomes
   104768412
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: HSP70 MreB_Mbl Hydantoinase_A FGGY_C
Motif
Other DBs
NCBI-GeneID: 104768412
NCBI-ProteinID: XP_010490701
Position
20
AA seq 651 aa AA seqDB search
MSGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPVNTVFDAKRLIGRRFSDSSVQSDMKLWPFKIQAGPADKPMIYVNYKGEEKEFAA
EEISSMVLIKMREIAEAYLGVSIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEP
TAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKSKKDITGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFY
STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQGAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLI
PRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKK
KVEAKNALENYAYNMRNTIQDEKIGEKLPAADKKKIEDSIEQAIQWLEGNQLAEADEFED
KMKELESICNPIIAKMYQGAGGEAGGPGAAGMDDDAPPASGGAGPKIEEVD
NT seq 1956 nt NT seq  +upstreamnt  +downstreamnt
atgtccggtaaaggtgaaggtccagcaatcggtatcgatctcggtactacttactcttgc
gtcggagtatggcaacacgaccgtgttgagatcattgctaatgatcaaggaaacagaacc
actccatcttacgttgctttcaccgactccgagaggttgatcggtgatgccgctaagaac
caggtcgccatgaaccctgttaacaccgtctttgatgccaagagattgatcggtcgtcgt
ttcagtgacagctctgtccagagtgacatgaaattgtggccattcaagatccaggccgga
cccgccgacaagccaatgatctacgtcaactacaagggtgaagagaaggagttcgctgct
gaggagatctcttccatggttctcattaagatgcgtgagattgctgaggcttaccttggt
gtctctatcaagaacgctgttgtcactgttcctgcctacttcaacgactctcagcgtcaa
gccacaaaggatgctggagttattgccggtttgaacgttatgagaatcatcaacgagccc
acagctgcagctattgcttacggtcttgacaagaaggctaccagtgttggagagaagaac
gttcttatcttcgatcttggtggtggtacttttgatgtctcccttcttaccattgaggaa
ggtatctttgaggtcaaggctactgctggtgacactcatcttggtggtgaagattttgac
aacagaatggtgaaccatttcgttcaggagtttaagaggaagagcaagaaggatatcact
ggtaacccaagagctcttaggaggttgagaacttcatgtgagagagcgaagaggactctt
tcctccactgctcagaccaccatcgagattgactctctctacgagggtattgacttctac
tccaccatcacccgtgctagatttgaggagctcaacatggatctattcaggaagtgtatg
gagccagttgagaagtgtctacgtgatgctaagatggacaagagcactgttcacgatgtt
gtccttgttggtggttccacccgtatccctaaggttcagcaattgcttcaggacttcttc
aacggcaaggagctttgcaagtctatcaaccccgatgaggctgttgcctacggtgctgcc
gtccagggagctattctcagcggtgaaggaaacgagaaggtccaagatcttctgttgctc
gatgtcactcctctctcccttggtttggaaactgccggaggtgtcatgaccactttgatc
cccagaaacacaaccatcccaaccaagaaggagcaggtcttctccacctactctgacaac
cagcccggtgtgttgatccaggtgtacgaaggtgagagagccagaaccaaggacaacaac
cttctcggaaagtttgagctctccggaatccctcctgctccacgtggtgtccctcagatc
actgtctgctttgacattgacgccaatggtatcctcaacgtttctgctgaggacaagacc
accggacagaagaacaagatcaccatcaccaatgacaagggtcgtctctcaaaggatgag
attgagaagatggttcaagaggcagagaagtacaagtctgaggacgaggaacacaagaag
aaggtcgaggccaagaatgctcttgagaactacgcttacaacatgaggaacaccatccag
gatgagaagatcggtgagaagctacccgcagcagacaagaagaagatcgaggactcaatt
gagcaggcgattcagtggctcgagggtaaccagttggccgaggctgatgagtttgaagac
aagatgaaggagttggagagcatctgcaacccaatcatcgccaagatgtaccaaggagct
ggtggtgaagccggtggaccaggtgccgctggaatggacgatgatgctcctcctgcttca
ggcggtgctggccctaagatcgaggaggtcgactaa

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