KEGG   Camelina sativa (false flax): 104786143
Entry
104786143         CDS       T05044                                 
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 2
  KO
K15172  transcription elongation factor SPT5
Organism
csat  Camelina sativa (false flax)
Pathway
csat03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    104786143
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csat03021]
    104786143
   03019 Messenger RNA biogenesis [BR:csat03019]
    104786143
Transcription machinery [BR:csat03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     104786143
  RNA polymerase I system
     104786143
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     104786143
SSDB
Motif
Pfam: KOW Spt5-NGN Spt5_N ProQ_C DUF4438 YajC
Other DBs
NCBI-GeneID: 104786143
NCBI-ProteinID: XP_010509782
Position
5:complement(8214659..8219827)
AA seq 1013 aa
MSNDDHYEDKDYSFDDDSEIEEDEEEEEYEPRSSRKGSSGKKRGRSNSVSDGRRRVGKKK
KSSGSAFIDWEVEVDDDIEDEDDDIVPEDNGFIVSGETELPNEEDDDDHRQFYQQRFHPD
EEEEEDVEEFEKRYMERLTSMHAENDVDLEEVNDVDQQALLPSVRDPKLWLVKCAIGRER
EVAVCLMQKSIDVESEFKIRSAIALDHLQNYIYVEADKEAHVKEAIKGMRNIFASHKILL
VPIKEMTDVLAVESKAIDLSRGTWVRMKLGIYKGDLAQVVDVDNVRKRVRVKLIPRIDLQ
ALANKLEGGENVKKKAFAPPPRFMNIDEARELHIRVEHRRDSMTGDYFETIDGMLFKDGF
LYKKVSTKSIVAQNITPTVDELERFKRSSENGEIDFVDLSTLFANRKKGHFMKGDAVIVI
KGDLKNLKGWIEKVDEDNVLIRTKMKGLPNPLAVNERELCKYFEPGNFVKVVSGINKGAT
GMVVKVDQHMLIILSDTTKEHIRVFADHVVKSAEVTNGVTKIGYHELHDLVLLSDLSFGV
IIKLDSEAIQILKGVPDRPEVSIVKASEIKYKVMKKINAQDRYKKVITVKDVVRVIEGPN
KGKQGPVEKIYKGVLFIHDRHNLEHTGYICTKSSSCVLVGGSCSGADRIVESFSRLGNFR
TPAPVPPSPRRFQWADMGYNLGAGTGGRHRGERRGRDDDCLLGTYVKIRLGPFKGYRGRV
VEVKKNTVRVELEAKIVTVDREAILDITDNNVATPSQYNIGSQTPLHPSRTPLRPCMTPM
RDSGATPIHDGMRTPMRGRAWNPYMPMSPHRDNWEDGNPGSWGTSSQYHSGSPYEAATPG
SGWATSTPGRSSYSDEGTTIRNGNAPSPMTPSSASYLPSTPGGQQPMTPGTDLDVMSPDI
GGDAETRFMPGILVNVHKAGEDSNPGVIRDVLPGGSCVVALGYRGEGDTVMATESEVRLV
SPRKNERVKIVGGKYCGSTAKVIGLDGSEGIVRLDDSLDVKIMNLAILAKFVH
NT seq 3042 nt   +upstreamnt  +downstreamnt
atgtctaatgatgatcactacgaagacaaagattatagctttgacgatgattcagagatc
gaagaggatgaggaggaagaagaatatgagccgagaagtagccgtaaaggaagctcaggg
aagaaaaggggaagatcaaattcagtttccgatggtcgtcgtcgggtagggaaaaaaaag
aagtcttcaggttccgcgttcatagactgggaggtcgaggtcgatgacgacatcgaagac
gaagatgatgatatagttccagaggacaatggttttattgtaagtggtgaaactgaactt
cccaatgaggaggatgatgatgatcataggcaattttaccaacagaggtttcatcctgat
gaagaagaagaagaagatgttgaagagttcgagaagagatacatggaaaggcttactagt
atgcatgcagagaatgatgttgaccttgaagaggttaacgacgttgatcagcaagcgctt
ttgccatcagttcgtgacccaaaattgtggcttgtgaaatgtgcgattggccgtgagaga
gaagttgctgtttgtcttatgcaaaaaagcatagatgtagaatcagagttcaagattaga
tctgctattgcccttgatcatcttcagaactatatatatgttgaagcggataaggaagct
cacgtgaaagaggctatcaagggcatgaggaatatctttgctagtcataagattttactt
gtccccataaaagaaatgactgatgttcttgctgtagaaagtaaagcaatcgatctatcc
cggggtacgtgggttagaatgaaacttgggatatataagggtgatctagctcaggtggtt
gatgttgataatgttcgtaagagggtcagagtcaagttgatcccaagaattgatctgcag
gctctagccaataagctggagggaggagagaatgtcaagaagaaagcttttgctccacct
ccacgtttcatgaacattgatgaggcaagggaacttcacatacgtgttgagcatcggcgt
gattcaatgactggtgactactttgaaactatcgatggtatgcttttcaaagatgggttt
ctctacaagaaagtatcaacaaagtcgattgttgctcagaatattacaccaaccgtcgat
gaacttgaaagattcaagagatcaagtgaaaatggggagatcgactttgttgatctgtca
actttatttgcaaatagaaagaagggtcatttcatgaaaggtgatgcggtcatcgttatc
aagggtgatctaaaaaacttaaagggttggattgagaaagtagatgaagataatgttctt
atcagaacaaagatgaaaggtcttcctaatcctcttgctgtgaatgagagagagctttgc
aaatactttgaacctggaaattttgtgaaagttgtgtctggcattaataaaggagcaact
ggcatggttgtcaaagttgatcagcatatgcttatcattctgtctgatacaaccaaagag
catattcgtgtcttcgctgatcatgttgtcaagagtgcagaagtgactaatggtgtcaca
aaaattggatatcatgaacttcatgatcttgtgcttctaagtgacttgagctttggagta
atcataaaacttgatagtgaagctatccagattctcaaaggggttcctgacaggccggaa
gtctctattgtcaaagccagcgaaataaaatacaaagttatgaagaaaatcaatgcgcaa
gaccgttacaaaaaggtcatcacagtgaaagatgttgtcagggtcattgagggtcctaac
aaaggtaaacaaggtccagtggagaaaatctacaaaggagtgttgtttatacatgaccga
cataaccttgaacacactggatatatctgcactaaaagctcatcttgtgttcttgttggt
ggatcatgttccggcgcagacagaattgttgagtccttctcaaggttaggcaatttcagg
acaccagcaccggttccgccatctccaagaagatttcaatgggctgacatgggatataac
cttggagctggaactggagggagacatcgaggtgaaagaaggggaagagatgacgattgc
ttgctgggtacttatgtgaaaattcgtctggggcctttcaagggatatagggggcgtgta
gttgaagtaaaaaaaaatacagtgcgtgtggaactcgaggcaaagattgtgacagttgat
cgggaagcgatattggatataactgataataacgtagccacaccctctcagtataatatt
ggaagccaaactcctctacatccttcacggactccacttcgtccttgtatgactccgatg
cgggattctggagctacacctatccatgatggaatgaggacacctatgcgtggtagagct
tggaatccttacatgcctatgagtcctcacagggataactgggaagatgggaatccggga
tcatggggaacaagttcacagtatcatagtggaagtccatatgaagcagctacgcctgga
tcaggatgggctactagtactcctggtcgtagtagttacagtgatgaaggaacaacaata
agaaatggtaatgctccaagtcctatgacaccaagctctgcttcctatctacctagcact
cccggaggacaacaaccaatgacacctggaactgatcttgatgtcatgtctcctgatata
ggtggggacgcagaaacaaggttcatgcctggtattttggtcaatgtacacaaggctgga
gaggatagcaatcctggcgtcatccgagatgttcttccgggtgggtcatgtgtagtagct
cttggatacagaggtgaaggcgacacggtaatggcgacagagagtgaagtgaggctagtt
agtccgaggaagaacgaacgtgtgaagattgttggaggcaaatattgtggttcaacagct
aaggtcattggtttagacggatcggagggtatagttaggctagatgacagtctcgatgtc
aagattatgaacttggctatattagccaagtttgttcattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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