KEGG   Camelina sativa (false flax): 104787180
Entry
104787180         CDS       T05044                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
csat  Camelina sativa (false flax)
Pathway
csat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104787180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104787180
   03041 Spliceosome [BR:csat03041]
    104787180
   03009 Ribosome biogenesis [BR:csat03009]
    104787180
   03016 Transfer RNA biogenesis [BR:csat03016]
    104787180
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     104787180
Spliceosome [BR:csat03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    104787180
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    104787180
Ribosome biogenesis [BR:csat03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    104787180
Transfer RNA biogenesis [BR:csat03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    104787180
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk ResIII Helicase_C ATPase_2 nSTAND3 CENP-Q
Other DBs
NCBI-GeneID: 104787180
NCBI-ProteinID: XP_010511015
Position
5:18369070..18374965
AA seq 984 aa
MGSVKRKSAEESSDCAPPQKVQREDDSTQIINEELVGCVHDVSFPENYVPLAPSVDNKPP
AKEFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIYTSPIK
ALSNQKYRDFKEEFADVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREVAWIIFD
EVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYR
PTPLQHYVFPAGGNGLYLVVDEKAKFHEDSFQKSLNALVPTNEGDKNGKSHKGLVIGKFG
EESDIFKLVKMIIQRQYDPVILFSFSKKECETLATQMSKMDLNSDDDKDAVETIFTSAMD
MLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGL
NMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKMEPTVAK
SMLKGSADSLNSAFHLSYNMLLNQLRCEEGDPENLLRNSFFQFQADRAIPDLEKQIKSLG
KERDSMVIEEEESLKNYYNLIFQHKSLKKDICEIVFTPKYCLPFLLPNRAVCLDCTNDDE
EQQSFSIEDQDTWGVIMKFNKVKSVSEDDNKRPEDANYTVDVLTRCMVSKDGVGKKKVKA
VPIKERGEPVVVTVPLSQIKSLSSAIMNIPKDLVPLEARENALKKVSELLSRHPDGIPLD
PEVDMKIKSSSYKKTVRRLEALENLFEKHKIAKSPLITEKLKVLHMKEELTAKIKSLKKT
VRSSTTLAFKDELKARKRVLRRLGYTNSDNVVELKGKVACEISSAEELTLTELMFSGVFK
DAKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAELQLDCKVEIDVESF
VQSFRPDIMEAVYAWAKGSKFFEVMKIVRVFEGSLIRAIRRMEEVLQQLIVAAKSIGETQ
LEAKLEEAVSKIKRDIVFAASLYL
NT seq 2955 nt   +upstreamnt  +downstreamnt
atgggttcggttaagagaaaatcagcggaggaatcctctgattgtgctccgccgcagaag
gttcaaagagaagacgattcaacccaaatcatcaacgaagagcttgttggttgcgttcac
gatgtttccttccctgaaaattatgttcctcttgctccctccgttgacaataaaccaccg
gctaaagagttcccctttacccttgactccttccaatctgaagctatcaagtgtctcgat
aatggcgagtcagtcatggtttcagctcatacatctgctggtaaaactgttgtggcatcc
tatgctattgccatgtctttgaaggaaaaccagagggttatctacacttctcctataaag
gcacttagtaatcagaagtacagagattttaaagaagagtttgctgatgttggtttgatg
actggggatgttacaattgatcctaatgcctcttgccttgtcatgaccacggagattttg
cgtagcatgcagtacaaagggtcagagattatgcgggaggttgcctggattatttttgat
gaggtgcattacatgcgagatagtgaaagaggtgtggtttgggaagaaagtattgtaatg
gctccgaagaattctcgttttgtgtttctttctgcaactgttcccaatgccaaggagttt
gcggattgggttgctaaggttcaccaacaaccatgccacattgtttacactgattatcgg
ccaactccacttcagcactatgtctttcctgctggaggtaatggactttacttggttgtg
gacgaaaaggctaaatttcatgaggatagcttccagaaatctctgaacgcactggttccg
actaatgagggtgacaagaatggaaagtctcataagggattagtgattggaaaatttggt
gaagaaagtgacattttcaaactggtgaaaatgataattcagcggcaatatgatcccgtg
attttgttcagtttcagtaaaaaggaatgtgagacacttgctacgcagatgtctaagatg
gatttaaacagcgatgatgacaaagacgctgtggagacaatctttactagcgcaatggat
atgctttcagatgatgataagaagctacctcaggtgtcaaatattttacccatcttaaaa
cgaggtataggcgttcatcactcgggactgcttccaattttgaaagaagtaattgagata
ttgtttcaagaaggtcttattaagtgtttgtttgctacagagacatttagtattggtttg
aacatgccggcaaagacagttgtttttacaaatgtacgtaagtttgatggagacaagttc
cggtggttatcaagtggagaatatatacagatgagtggtcgtgctggacgtcgaggtatt
gacaaacgaggtatctgtatcctcatggttgatgagaagatggaacccactgttgccaaa
tcaatgctcaaaggaagtgctgattctttgaacagtgccttccatttgagctataacatg
cttctaaatcagttgcgatgtgaagaaggtgatcctgagaatcttctccgcaattcgttc
tttcagtttcaagctgaccgtgctatacctgatctcgagaagcaaataaaatccctggga
aaagagagagactctatggtgattgaagaagaagaaagtttaaaaaactactataacctc
attttccaacataagagtctgaagaaggatatatgtgaaattgtgttcaccccaaagtac
tgcttaccctttttgctgccaaacagagctgtttgtctcgattgcacaaatgatgatgaa
gagcaacaatcattcagcattgaagatcaggatacctggggagtaataatgaaattcaac
aaagtcaaaagcgtatctgaagatgataataaaagaccagaggatgcaaactacaccgta
gatgtattaactagatgtatggttagcaaagatggcgttggcaaaaagaaagttaaggct
gtgccaattaaggaacgtggtgagcctgttgtggtcactgttcctttatctcagattaag
agtttaagcagtgcaatcatgaatataccaaaagaccttgtaccactggaagctcgagag
aatgctctgaagaaggtttctgagttactctctagacatcccgatggaatacccctagat
cctgaagttgatatgaagattaagagcagctcttacaaaaagacagttcgtcgcctggag
gctctggaaaacctatttgaaaaacacaaaattgcgaaatctccgctcataacagaaaag
ctgaaagttctacacatgaaggaagagctaacagccaagatcaagtcacttaagaaaact
gtccgatcatcaacaacattggcgtttaaagatgaactcaaggccagaaagcgtgtttta
cgaaggctaggatacaccaatagtgataatgtcgtggagttgaaggggaaggttgcatgt
gaaatcagtagtgcagaagaattgacattaacggagctaatgttcagtggtgtcttcaag
gatgcaaaggtggaggagttggtttctctcctctcttgctttgtgtggcgagagagactc
cctgacgctgctaaacccagagaagaactcgacttgctcttcatacagttacaagacaca
gccaggcgtgttgctgaacttcagcttgactgcaaggttgaaattgatgtggagagtttt
gtgcaatcgttcagaccggatataatggaggcggtgtatgcttgggcaaaagggtctaaa
ttctttgaggtcatgaagattgttcgtgttttcgaagggagcttgatcagagcgataagg
agaatggaggaagttttgcaacagctcatagtagctgcaaaatctataggagaaacacag
cttgaagctaaattagaagaagctgtttctaagatcaaaagagacattgtatttgcagca
tctctctacttgtga

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (9)   
   Pfam (9)   
All databases (27)   

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