KEGG   Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Clst_0516
Entry
Clst_0516         CDS       T02527                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
csd  Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Pathway
csd03030  DNA replication
csd03410  Base excision repair
csd03420  Nucleotide excision repair
csd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Clst_0516
   03410 Base excision repair
    Clst_0516
   03420 Nucleotide excision repair
    Clst_0516
   03430 Mismatch repair
    Clst_0516
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csd03032]
    Clst_0516
   03400 DNA repair and recombination proteins [BR:csd03400]
    Clst_0516
Enzymes [BR:csd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Clst_0516
DNA replication proteins [BR:csd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Clst_0516
DNA repair and recombination proteins [BR:csd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Clst_0516
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Clst_0516
   MMR (mismatch excision repair)
    DNA ligase
     Clst_0516
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Clst_0516
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 BRCT_2 PTCB-BRCT HHH Lar_restr_allev zf-TFIIB Flavoprotein RUBY_RBDX zf-C4_Topoisom
Other DBs
NCBI-ProteinID: AGI38613
UniProt: L7VLP9
Position
576505..578481
AA seq 658 aa
MDEKVVRIKELVNRLNEASKAYYQENREIMSNYEYDKLYDELVELEKETGIVLSNSPTVK
VGYELLSSLPKEAHEQPMLSLDKTKDVNALVEWLGDKKGILSWKLDGLTIVLTYSNGELI
KAVTRGNGEVGEVVTNNAKVFRNLPIRISYKGNLVLRGEAVIRYSDFEKINREIENVDAK
YKNPRNLCSGSVRQLNNRITAERNVYFFAFQIVKVDEPEIGKFRSRQLNWLKSQGFDVVE
FKEVDSSNLEQTVKWFSEQVVKNDFPADGLVLAYDDVEYGRSLGTTAKFPRDSIAFKWQD
EVAETRLIKIEWSASRTGLINPIAIFEPVELEGTTVKRASVHNISVMESLELGIGDTIGV
YKANMIIPQIAYNLTKSGNIEIPEHCPVCGGQTQIRQENGVKFLYCTNGECPAKHIKSLV
HFVSRDAMGIDGLSEATIEKFVEKGFIKDYADIFRLERFRNEIVKMEGFGEKSYSNLISS
INKARKTNAVRLLYSMGIPGIGLSNAKRIAGYFNHEWGRIENATFEELINIDGIGDIMAR
DFVAFFKNERNRERIRELMAEIELEKETASDKSQIFRDITFVITGSVNHFKNRAELKKVI
EERGGRVTESVTSNTNYLINNDINSTSAKNKKAKELGIPIITEEQFLEWLNDGVIPGE
NT seq 1977 nt   +upstreamnt  +downstreamnt
atggacgaaaaagtagtcagaattaaagaactggtaaacaggcttaatgaagcgtctaaa
gcatattaccaggaaaatcgggagataatgtccaattacgagtatgacaaactgtatgat
gaacttgtggaactggaaaaggaaacgggcatagtcctttcaaacagccctacggtgaaa
gtcggatatgagctgctcagcagtctgccgaaagaagcgcatgagcagcccatgctttct
ttggacaagacaaaagacgttaatgcgttggtggaatggctcggcgacaaaaagggaata
ctgtcgtggaaacttgacggtcttaccattgtgcttacatattccaacggtgagcttatt
aaagcggtaacccgcggcaacggtgaagtgggagaagtggttaccaacaatgcgaaggtg
tttaggaatttgcccatcagaatttcctataaaggaaatcttgtgctgagaggggaagct
gttatcagatattcggactttgaaaaaatcaacagggaaattgaaaatgtggacgcaaaa
tataagaatccgagaaatttatgcagcggctcggtcaggcagctcaataacagaataacc
gccgaaaggaatgtatatttttttgcctttcagattgtaaaggttgacgagccggaaata
ggaaaattcaggagcagacagttgaactggcttaaaagccagggctttgatgtggtggaa
tttaaggaagtggactcatcaaacctggaacagaccgttaaatggttctccgaacaggtt
gtaaaaaacgattttcctgccgacggtctggtgcttgcgtatgatgatgtggaatacggg
cgttcccttggcacaacggccaaattccctagagactccattgcttttaagtggcaggat
gaggtagccgaaaccaggctgataaaaattgaatggagcgcctcacggacagggctgatt
aatccaattgcgatttttgaaccggtggagcttgaggggacaacggtaaaacgagccagt
gtacataacatcagtgttatggaatcgctggaacttggaattggagatacgataggcgta
tacaaggcaaatatgataattcctcagatagcgtacaacttaacaaaaagcggaaatatt
gaaattccggaacactgtcctgtatgcggcgggcagacacaaatcaggcaggaaaacgga
gtaaagttcctatattgcaccaacggcgaatgcccggcaaaacatataaagtcgcttgtg
cattttgtcagcagggatgcgatgggaattgacgggctttccgaagccacgatagaaaaa
tttgttgaaaaaggatttattaaggattatgcggacattttcaggctggaaagattcaga
aacgaaatagtgaaaatggaaggattcggggagaagtcgtacagcaatttgataagttca
atcaacaaggcccggaaaaccaatgccgtccgtctcctttacagtatgggcatacccggt
atcggcctttccaatgccaaacgcattgcgggttatttcaatcatgagtggggccgtatt
gaaaacgcaacgtttgaggagttaatcaatattgatggaattggcgatattatggcccgg
gattttgttgccttttttaaaaacgaaagaaacagggaacgaatcagggagcttatggcc
gaaattgagctggagaaggaaacggcgtctgataaaagccagatattcagggatattacc
tttgttattacagggtcggtcaatcattttaagaaccgtgcggaattgaaaaaggtgata
gaagagaggggaggcagggtaaccgagtcggttacgtcaaacaccaattatcttataaat
aatgatataaattcaacttcagcaaaaaataaaaaagcaaaggaattggggattccgatt
ataaccgaggaacagttcctggaatggcttaatgatggagttattcccggcgaatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (34)   

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