KEGG   Caulobacter segnis: Cseg_4228
Entry
Cseg_4228         CDS       T01221                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
cse  Caulobacter segnis
Pathway
cse03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cse00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Cseg_4228
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cse03021]
    Cseg_4228
   03019 Messenger RNA biogenesis [BR:cse03019]
    Cseg_4228
Transcription machinery [BR:cse03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Cseg_4228
Messenger RNA biogenesis [BR:cse03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Cseg_4228
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 ATPase_2 OB_RNB NACHT Spore_III_AA AAA AAA_14 AAA_25
Other DBs
NCBI-ProteinID: ADG12635
UniProt: D5VQ62
Position
4618858..4620291
AA seq 477 aa
MTEETENEIPGAEEATIEATVADVADVATEASVETEAEGEGDDEGSGVAEAVAALGLKSM
SLQELKEKSPADLLAFAETFEVENANSMRKQDMMFAILKTLAEEGVEISGSGTMEVLQDG
FGFLRSPEANYLPGPDDIYVSPSQIRKYGLRTGDSVEGAIRSPREGERYFALTSVTKINF
ESPENVRHKVHFDNLTPLYPEERLNMELPDPTVKDRSGRVIDIVAPLGKGQRCLIVAPPR
VGKTVMLQNIAKSIETNHPECYLIVLLIDERPEEVTDMQRTVKGEVIASTFDEPATRHVQ
VAEMVIEKAKRLVEHKRDVVILLDSVTRLGRAYNTTVPSSGKVLTGGVDANALQRPKRFF
GAARNVEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPAIDVL
KSGTRKEELITPRDQLQKTYVLRRILNPMGASDAIEFLLDKLRQSKTNGDFFQSMNT
NT seq 1434 nt   +upstreamnt  +downstreamnt
atgaccgaagaaaccgaaaacgaaatcccgggcgccgaagaggcgaccattgaagcgacc
gtcgcggatgtcgccgacgtcgccaccgaagcctcggtcgaaaccgaagcggaaggcgaa
ggcgacgacgagggctctggcgtcgccgaggccgtcgcggccctgggcctgaagtccatg
tccctgcaggagctgaaggagaagtccccggccgacctgctggcgttcgccgagaccttc
gaggtcgagaacgccaactccatgcgcaagcaggacatgatgttcgcgatcctgaagacc
ctcgccgaagaaggcgtggagatctcgggctcgggcaccatggaagtgctgcaggacggc
ttcggcttcctgcgctcgccggaagccaactaccttccgggtccggacgacatctacgtc
tcgccatcgcagatccggaagtacggcctgcgcaccggcgacagcgtcgagggcgcgatc
cggtcgccgcgggaaggcgagcgctacttcgccctgaccagcgtcaccaagatcaatttc
gagagccccgagaacgtgcgccacaaggtgcacttcgacaacctgacgccgctctatccc
gaagagcgcctgaacatggaactgcccgatccgaccgtgaaggaccgctcgggccgcgtg
atcgacatcgtcgcgccgctcggcaagggccagcgctgcttgatcgtcgccccgccgcgc
gtgggtaagacggtgatgctgcagaacatcgccaagtcgatcgagaccaaccaccccgag
tgctacctgatcgtcctgctgatcgacgagcgcccggaagaagtcaccgacatgcagcgc
acggtgaagggcgaggtcatcgcctcgaccttcgacgagccggcgacccgccacgtccag
gtggccgagatggtcatcgagaaggccaagcgcctggtcgagcacaagcgcgacgtcgtc
atcctgctggactcggtcacgcgtctgggccgggcctacaacaccacggtgccgtcgtcg
ggcaaggtgctgaccggcggtgtcgacgccaacgctctgcaacgcccgaagcgcttcttc
ggcgccgcgcggaacgtggaagagggcggctcgctgtcgatcatcgccacggccttgatc
gacaccggcagccggatggacgaagtcatcttcgaagagttcaagggcaccggtaactcg
gaaatcgtcctggaccgcaaggtggccgacaagcgcatcttcccggccatcgacgtgctc
aagtccggcacccgcaaggaagagctcatcacgccgcgcgaccagctgcagaagacctac
gtcctgcgccgcatcctcaacccgatgggcgcctcggacgcgatcgagttcctgctcgac
aagctgcgccagtcgaagacgaacggcgacttcttccagtcgatgaacacctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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