KEGG   Cynoglossus semilaevis (tongue sole): 103381814
Entry
103381814         CDS       T04866                                 
Name
(RefSeq) collagen alpha-1(I) chain-like
  KO
K06236  collagen type I alpha
Organism
csem  Cynoglossus semilaevis (tongue sole)
Pathway
csem04510  Focal adhesion
csem04512  ECM-receptor interaction
csem04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:csem00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    103381814
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    103381814
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    103381814
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:csem00536]
    103381814
Glycosaminoglycan binding proteins [BR:csem00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   103381814
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 103381814
NCBI-ProteinID: XP_008312583
Position
8:complement(6967313..6982392)
AA seq 1447 aa
MFSFVDIRLALLLSATVILARGQGEDDVSFGSCKYDGQFFNDKDVWKPEPCQICVCDSGT
PLCDEVICEDTTDCADPIIPDGECCPICPEDGTVEEPTYETTKGPNGDKGDRGPPGPPGN
DGIPGMAGPEGPPGPPGAPGLGGNFSPQMSYVDHSKSSGPPVPGPMGPMGPRGPPGPSGS
AGPQGFTGPPGEPGEPGSPGPMGSRGPSGPPGKNGDDGEPGKAGRPGERGAPGPQGARGF
PGTPGLPGIKGHRGFSGLDGAKGDSGPAGPKGEPGAPGENGIPGSMGARGLPGERGRPGP
PGPAGARGNDGNSGAAGPPGATGPSGPPGFPGGAGAKGETGPAGGRGSEGPQGARGEPGN
PGPAGPAGPAGNPGTDGAPGNKGGPGAAGIAGAPGFPGSRGPAGPQGPAGSPGPKGNNGD
PGPSGSKGEPGAKGDPGPAGVQGLPGQSGEEGRRGARGEPGGAGPRGPPGERGGPGARGF
PGTDGGAGGKGAPGERGSPGPLGAQGAAGEAGSPGAPGAPGSKGMTGSPGSPGPDGKAGP
SGAPGQDGRPGPPGPNGGRGLPGVMGFPGPKGPAGESGKPGERGAAGAVGALGAPGKDGD
VGAPGPSGPAGPAGEKGEQGPAGSAGFQGLPGPQGAAGETGKPGEQGAPGEVGPHGAPGS
RGDRGFPGERGAPGPNGPVGHRGSPGPAGNDGAKGEPGAAGAPGANGGPGMQGMPGERGS
SGLPGARGERGDAGPKGGNGAPGKDGARGMTGAIGVPGPSGAQGEKGEGGPPGIVGPTGP
RGAPGERGEAGPAGPAGFAGPPGLDGQSGAKGETGDTGPKGDAGAPGPAGPVGGSGPQGP
AGPPGPKGARGGAGSPGATGFPGPAGRVGPPGPSGAAGPPGPAGPVGKDGQRGARGETGA
AGRPGEAGAVGPPGNPGEKGSPGSDGAPGPAGLPGPSGINGQGGVVGAPGQRGERGFSGL
PGPSGEPGKQGPVGPVGERGAPGPAGPPGLSGPTGEAGREGSTGHDGNPGRDGAPGPKGD
RGESGPGGPPGPPGTPGAPGHVGPSGKTGERGEAGPAGPAGPAGPAGVRGSAGPAGAKGD
RGEAGEAGERGHKGHRGFSGMQGLPGPAGAAGERGPAGVNGPAGPRGPSGSSGSPGKDGM
NGLPGPIGPPGPRGRNGEMGPAGPPGPPGPAGPPGAPGGGFDFVSQPLQEKAPDPYRGGH
YRADDPNMMRDRDNEVDTTLKTLTQKVEQIRSPDGTQKSPARMCRDLRMCHPPWTVSTYW
VDPNQGSSLDAIKVHCNMETGETCIYPTESSIPMKNWYRSQDIKKHVWFSEAMTGGFQFQ
YGSEGADAEDVSIQMTFMRLMSNQASQNITYHCKNTIAYMDSATGNLKKALLLQGSNDVE
IRAEGNSRFTYSVSEDGCTSHTGAWGKTVIDYKTTKTSRLPIIDIAPMDVGAPDQEFGVE
IGPVCFL
NT seq 4344 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggatattcggctagcgctcctgctcagcgcgaccgtcattttggca
agaggtcaaggcgaggatgacgtctcattcggctcctgcaagtacgacggacagttcttc
aatgacaaagacgtatggaaacctgagccctgtcagatctgcgtctgtgacagtggaacc
cccttgtgcgacgaggtgatctgcgaggacacaaccgactgcgccgaccccatcatccca
gacggagagtgctgccctatctgccccgaggatggcacggtcgaggagccaacatatgag
acaaccaagggacccaacggtgacaagggtgacaggggtccacctggtcctcctggcaat
gatggaatcccaggaatggctggtcctgagggcccacccggcccccctggtgcccctggc
cttggcggaaacttctctcctcaaatgagctacgttgaccactccaaatcaagtggccca
cctgttccaggcccaatgggtcccatgggtccccgtggtcctcctggaccctctggatct
gctggtcctcagggtttcactggaccccctggtgagcccggtgagcccggttctcctggt
cccatgggttcccgtggtccttctggccccccaggaaagaacggagatgatggtgagcct
ggcaaagctggacgccctggtgagcgtggagctcctggacctcagggtgctcgtggattc
cccggaactcctggactccctggaatcaagggacacagaggtttcagcggtctggatgga
gccaagggagactctggacctgctggacctaagggagagcctggtgcccctggtgagaac
ggtatccccggttccatgggtgctcgtggtcttcctggtgagagaggtcgccctggaccc
cctggtcctgctggtgctcgtggtaacgatggcaactctggtgctgctggccctcctgga
gctactggaccttctggcccccctggattccccggtggtgctggagcaaagggagagact
ggtcctgctggaggccgtggatctgagggaccccagggagcccgtggtgagcctggtaac
cccggacctgctggacccgctggacctgccggaaaccctggaactgacggtgcccctggc
aacaagggtggccctggtgctgctggtattgctggtgctcctggtttcccaggttctcgt
ggtcctgctggacctcagggacctgctggttcccctggtcccaagggtaacaatggagac
cctggtccctctggttctaagggagagcctggtgccaagggagatcctggccccgctgga
gttcagggacttcctggacaatctggtgaggagggaaggagaggagctcgtggtgagccc
ggtggtgctggacctcgtggaccccctggagagcgtggtggccctggtgctcgtggtttc
cctggtactgatggaggtgctggtggcaagggtgcccctggtgagcgtggttcccctgga
ccattgggagctcagggagctgctggtgaggctggaagtcctggtgcccccggtgctcct
ggatccaagggtatgactggtagccctggttcacctggccctgatggcaaggctggacct
tctggtgctcctggacaagatggacgccctggacctcctggccccaacggtggaagagga
ctgcccggagtgatgggattccccggacctaagggacctgctggtgagtctggcaaacct
ggtgagagaggagctgctggtgctgttggcgctcttggtgcccctggcaaagatggtgat
gttggtgctcctggaccttctggccctgctggacctgctggagagaagggagagcaagga
cctgctggatctgctggattccagggtcttcctggaccccaaggtgctgctggtgagact
ggcaagcctggtgagcagggagctcctggtgaggttggaccccacggcgcacctggatca
agaggcgacagaggtttccctggtgagcgtggtgctcctggtcctaatggcccagttgga
caccgtggttcccctggacctgctggtaacgatggtgctaagggagagcctggtgctgct
ggtgcccccggtgctaatggaggccccggaatgcagggaatgcctggtgagcgtggatct
tctggtctccctggagccaggggagagagaggcgacgctggtcctaaggggggtaacggt
gcccctggcaaagatggtgcccgtggtatgactggtgccatcggagttcctggaccttct
ggtgctcagggtgagaagggtgagggcggtcctcctggcattgttggacccactggacct
cgtggtgcccctggtgagcgtggagaggctggacctgctggacctgctggattcgctgga
cctcctggtcttgatggtcagtctggtgctaagggagagactggtgacactggacccaag
ggagatgccggtgctcctggacccgctggacctgttggaggttctggtcctcagggacct
gctggtcctcctggacccaaaggagctcgtggtggtgctggatctcctggtgctactggt
ttccctggacccgctggcagagttggaccccccggcccctctggagctgctggaccccct
ggacccgccggacccgttggtaaagatggacaaagaggagcccgtggtgagactggtgct
gctggtcgtcctggtgaggctggtgctgttggtcctcctggaaaccctggagagaaggga
tcacctggttctgatggtgcccctggtcccgctggtctgcctggaccctcaggtatcaac
ggacagggtggtgttgtaggtgcccccggacaacgtggagagcgtggtttctctggtctt
ccaggacctagtggtgagcctggaaagcagggacctgttggacctgttggtgaacgtggt
gcccctggacctgctggacctcctggactgtctggtcccactggagaggctggtcgtgag
ggatctaccggacatgatggtaaccctggtcgcgacggagctcctggccccaagggagac
cgtggagagagtggacccggtggaccccctggaccacctggaacccctggagctccagga
catgttggcccatctggaaagactggtgaacgtggagaggctggtcccgctggacctgct
ggacctgctggccctgctggtgttcgtggatctgctggtcctgctggtgccaagggagac
agaggagaggctggcgaggctggagagagaggccacaagggacacagaggattcagcggc
atgcagggtctgcctggacctgctggggctgctggagagagaggacctgctggtgtcaac
ggacctgctggacccagaggaccttctggatcttctggttcccctggtaaggatggcatg
aacggtctgcctggacccattggacctcctggacctcgcggtcgcaatggagagatggga
cctgctggtcctcctggacctcctggacctgccggtcctcctggagcacccggtggtgga
tttgactttgtcagccagccactccaggagaaggctcccgatccctaccgtggaggccac
taccgcgctgacgaccccaacatgatgcgcgatcgcgacaacgaggttgacaccaccctg
aagaccttgacccagaaggttgagcagatccgcagccctgacggtactcagaagagccct
gctcgcatgtgccgtgacttgaggatgtgccaccctccgtggacggtgagcacctactgg
gttgaccccaaccaaggctcatctttggatgccatcaaggtccactgcaacatggagact
ggcgagacctgcatctatcccaccgagtccagcattcccatgaagaactggtaccgcagc
caggatatcaagaagcatgtctggttcagcgaggccatgactggaggattccagttccag
tatggcagcgagggagctgatgccgaggatgtgagcatccagatgaccttcatgcgcctg
atgtccaaccaggcctctcagaacatcacataccactgcaagaacaccattgcctacatg
gactctgccaccggcaacctgaagaaggccctgctgctccagggctccaacgacgttgag
atcagagccgagggcaacagccgcttcacatacagcgtcagcgaggacggttgcacgtca
cacactggtgcatggggcaagacagtcattgactacaagacaacaaaaacatcccgcctg
cccatcattgacattgctcctatggatgttggtgcacctgatcaggaattcggcgtcgaa
attggcccagtttgcttcttgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (119)   
   KEGG ORTHOLOGY (1)   
   RefGene (115)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (130)   

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