KEGG   Cynoglossus semilaevis (tongue sole): 103382139
Entry
103382139         CDS       T04866                                 
Symbol
xrcc6
Name
(RefSeq) X-ray repair cross-complementing protein 6 isoform X1
  KO
K10884  ATP-dependent DNA helicase 2 subunit 1
Organism
csem  Cynoglossus semilaevis (tongue sole)
Pathway
csem03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:csem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    103382139 (xrcc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csem03041]
    103382139 (xrcc6)
   03400 DNA repair and recombination proteins [BR:csem03400]
    103382139 (xrcc6)
Spliceosome [BR:csem03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    103382139 (xrcc6)
DNA repair and recombination proteins [BR:csem03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA-PK complex
     103382139 (xrcc6)
SSDB
Motif
Pfam: Ku_N Ku Ku_C SAP SAP_new25
Other DBs
NCBI-GeneID: 103382139
NCBI-ProteinID: XP_008313041
UniProt: A0A3P8WWT7
Position
8:12245560..12249885
AA seq 610 aa
MAEWNAFYHNEDEDEEQEEGEQTSGDYKVTGRDSLVFLVDASKEMFIKGEDGELSNFDMT
MQVVRSVYTTKIISSYRDLIALVFYGTEQSKNPRNSFKHVYVYHDLDEPGATRVRDLDAL
LGDKGEKLAAETMGSGETSLGDALWCCANLYSDIKYRLSHKRLMIFTCRDDPHGGNSTKD
RQAHTKARDLKETGVMIDLMHLMKPGGFDVSLYFRDIVSPAEDESELGLQLKPCDKLDDL
RKRVLAKEQKKRSLARIKLILDEGINMAVGLYATAVTARKPGAVKLYRETNEQVRSKTRT
FQTQTGSLLLPSEIKKAQVYGKKKIVMERDEVDAIKKFDDPGLYLIGFKPMEKLKLHHHI
RPAIFLYPEDDQVKGSACLFSALLKKCSEKNVFAVCRCTPRRNIPPRFVALVPQKEEVDD
GKVQTKPPGFNVIFLPYADDIRNLDIPHCPIASPIQVNKMKEIVSKLRFKYRSDAFENPV
IQQHYRNLEALALDMVAPEETDDLIMPKVEQMDIRLGPLIDEFKNMVYPFNYNPDVKPAA
KRKTADDGGGSEKKPKVEVSEEELKNHMKNGTIGKLTVPLLKDACKQFGIRVAGSKKQEL
IDALVAHLGS
NT seq 1833 nt   +upstreamnt  +downstreamnt
atggcggagtggaacgctttctaccacaacgaagatgaagatgaagagcaggaagaggga
gaacagacttcaggagattacaaagtcacaggaagagacagtttggtgtttctggttgat
gcttcaaaagaaatgtttatcaaaggagaggatggagagctgtccaactttgacatgacc
atgcaggttgtgcgcagtgtttacaccactaagatcatcagcagttacagagatctgata
gctctggtcttttacggtacagagcagagcaaaaaccccaggaactcattcaagcatgtt
tacgtttaccatgaccttgatgaaccaggtgcgacacgagtgcgggacttggacgctctg
ctgggggataaaggagaaaaattagcagctgagaccatgggtagtggagagacatcactt
ggcgatgccctgtggtgctgcgccaacctgtacagtgacatcaagtaccgactttctcac
aagagactcatgatcttcacctgcagggatgatccacatggaggcaacagcacaaaggac
cgtcaggctcacactaaagcgcgtgacctcaaggagactggagttatgatcgatttgatg
catctaatgaaaccaggtggctttgacgtctcactctacttccgtgacattgtcagtcca
gctgaggatgagagtgagttgggtttacagctgaagccctgtgacaaactggacgacctt
aggaagagggttctggccaaggagcagaagaagagatccttagcacggataaagctgatt
ctggatgagggaataaacatggctgtgggactttatgcaactgcagtgacagcacgaaaa
cctggcgccgtcaaactttacagagaaaccaacgagcaagtccgtagcaaaacccgcact
ttccaaacccagacaggaagtctgcttctgcccagtgagataaaaaaagcccaggtttat
ggtaaaaaaaagatagtgatggagagagatgaggtggacgcaatcaagaagtttgacgac
cctggattgtatcttattggattcaaacctatggagaagctgaagttgcaccatcacatc
cgacctgcaatctttctttatcctgaagacgatcaagttaaaggcagtgcctgtctgttc
tccgctctgctgaagaagtgtagtgagaagaacgtctttgctgtgtgtcgctgtacacct
cgccgaaacataccaccacggtttgttgccttggtccctcagaaagaagaggtggatgat
gggaaagtacagactaaaccgccaggttttaatgtcatcttcctgccatatgctgatgac
atacggaatctagatattccacactgtcccattgcctcaccaattcaggtgaacaagatg
aaggagattgtctccaaactccgcttcaaatacaggagtgatgcgtttgagaacccagtt
atccagcaacattacaggaacctggaggccttagctctggacatggtggctccagaagaa
actgatgatctcatcatgccaaaggtggagcagatggacatccgtttgggtcctctgata
gacgagtttaaaaacatggtttatcctttcaactacaaccctgacgtcaaaccagctgcc
aaacgaaaaactgcagatgatggaggtggatctgagaaaaagccaaaagtggaggtgtca
gaggaggagctaaagaaccacatgaagaacggtaccattggaaaactgaccgtgccgcta
ctgaaagacgcctgcaagcagtttgggattcgcgtcgccgggtccaagaagcaagaactt
attgacgctcttgttgctcatctgggttcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (35)   

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