KEGG   Cynoglossus semilaevis (tongue sole): 103390956
Entry
103390956         CDS       T04866                                 
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
csem  Cynoglossus semilaevis (tongue sole)
Pathway
csem03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:csem00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103390956 (clp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csem03019]
    103390956 (clp1)
Enzymes [BR:csem01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     103390956 (clp1)
Messenger RNA biogenesis [BR:csem03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     103390956 (clp1)
SSDB
Motif
Pfam: CLP1_P Clp1 CLP1_N ATP_bind_1 AAA_16 AAA_22 nSTAND3 CbiA MMR_HSR1 TniB
Other DBs
NCBI-GeneID: 103390956
NCBI-ProteinID: XP_008325271
UniProt: A0A3P8VLL8
Position
15:complement(10479494..10482791)
AA seq 441 aa
MATEGVENVPEDAPAAGKVCNRFDLGKETELRFEVEAGEAAEQVELELVTGLAEVFGSEL
NRNKKYVFGAGSKIAVFTWQGCTVNLYGKPEVAYVSVETPMLLYLNTHAALEQMRRQAER
ENERGPRVMVVGPADVGKSTVCRMLLNYAVRMGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSTLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASAFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRDTRDEKIREYFYGFRGVTFYPFSYEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSAEDGEEGVRKGIVESPVCGFIVVTHVDTQTQILKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq 1326 nt   +upstreamnt  +downstreamnt
atggctacagagggtgtagaaaatgtgcctgaagatgctcctgcagctgggaaagtctgc
aacaggtttgatcttgggaaggagactgaacttaggtttgaggtggaggctggagaagca
gcagagcaagttgagctcgagctcgtcacaggattagctgaagtgtttggctccgagttg
aaccgcaataagaagtatgtgtttggtgcaggctccaagatagcagtttttacctggcaa
ggctgcactgtcaacctttatggaaagccagaggtggcgtatgtgtccgtggaaactcca
atgctgctttatctgaacacacatgctgccctggagcagatgagaagacaagcagagcgg
gagaacgagcgtggaccaagggtgatggtggtgggaccagcagacgtggggaagtcaaca
gtgtgtcggatgcttctaaattatgccgtcaggatgggcaggcggccaacactggtggaa
ttggatgtggggcaaagtggggtatctgtacctggaacagtctcagcactgtgtattgag
cgtcctgcagatgttgaagaaggtttctcagtccaggctcctttggtctaccactttggc
tccactaccccaggaaccaacatcaaactttacaacaagttaacgtcaaccttggctgag
gtgttttcacagcggtgtgaggtgaacaggaaggccagcgtgggaggttgtattattaac
acctgtggctgggtgaaaggctcgggataccaggctttggttcattgtgcctctgccttt
caggtggatgtggtgctggtactagatcatgaaagactgtacaacgaactgaaacgtgac
ctgcctcactttgtgcgggtcgtactattacctaaatctgggggtgtagttgaacgctcg
aaagagtgccggcgggacactcgggatgaaaagatacgtgaatatttctacggctttcgc
ggagtgaccttctaccctttctcatatgaagtgcgcttctcggatgttcgcatctataaa
attggcgctccctccatccctgactcatgtttgccactaggaatgtctcaagacgacaca
cagctaaagctggtccccgtgacacctggcagagacctcacttatcacgtgctgagtgtg
agcagtgccgaggatggagaggaaggggtcagaaagggtatagtggagagccccgtgtgt
ggctttatagtagtgacacatgtggacacacaaacacagatattgaaagtgctgtcccct
gcgcccagaccactgcccagacacaccctgcttatcatggacatacgttttatggatatg
aagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (28)   

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