KEGG   Cynoglossus semilaevis (tongue sole): 103392420
Entry
103392420         CDS       T04866                                 
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(V) chain
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
csem  Cynoglossus semilaevis (tongue sole)
Pathway
csem04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:csem00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    103392420
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:csem00536]
    103392420
Glycosaminoglycan binding proteins [BR:csem00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   103392420
SSDB
Motif
Pfam: Collagen COLFI VWC TILa
Other DBs
NCBI-GeneID: 103392420
NCBI-ProteinID: XP_016895259
Position
16:16518657..16547493
AA seq 1499 aa
MKGFVHLRTSLFLVISVTRVFLVTSQDATGGDDVNCKADGQVYTNKDIWKPDPCRICVCD
NGQVLCEEIHCDELTNCEKVYIPENECCPVCQTDSSGGRGTSTFGGDRIYKGQKGEPGDV
PQVTGIRGRPGPMGPPGSPGERGPRGNKGRPGLRGTAGYDGEPGVPGQPGEPGPPGHPTH
SGSPGGLMSQMASGFDGKTGPQAMLSGSRGEAGTRGPPGPNGSPGQAGPQGPHGDVGDPG
HMGPSGQRGAEGPPGKPGEDGEPGKPGNSGEVGFPGSAGPRGFPGTPGPPGLKGHRGHGG
PIGQKGETGAVGSKGATGPPGQMGGPGPMGPAGMPGERGRVGPGGIAGKRGPPGNVGKPG
PMGPLGLSGPSGYPGGPGMKGQPGPTGVRGPEGPQGQRGETGHLGRPGPVGIRGPMGTDG
GTGTKGPVGNLGPQGQGGHAGPPGPPGPQGSTGQPGIKGQLGDVGVPGFKGEAGPKGEPG
PPGSQGVIGPQGEEGKRGLRGDPGSVGPPGPVGERGAPGNRGFPGADGLPGPKGAQGDRG
ISGPGGPKGSLGDPGRTGEPGLPGARGLTGTPGVQGAEGKPGPLGAPGEDGRPGPAGSIG
TRGPAGTMGVPGPKGFNGDPGKTGEQGSAGVPGQRGPPGKDGEVGPAGPPGPSGVAGDRG
EQGPPGVNGFQGLPGNQGPPGEPGKPGDQGIPGELGAVGQIGPRGERGIPGERGDLGPTG
LQGPKGIPGAPGPDGSKGSPGPPGALGDVGPPGLQGMPGERGISGPPGPKGDRGAIGEKG
SEGTAGNDGARGAPGPVGPVGSAGPSGEKGEPGPKGPAGPPGSRGMHGARGEPGPIGAVG
FAGPQGPDGQPGVKGEPGEPGQRGDAGSPGPQGAAGAHGPHGPVGVAGLKGGRGTQGAPG
PTGFPGSAGRVGPPGPTGPLGEPGAIGPPGKEGPRGLRGDHGPPGRQGERGPAGPPGSAG
DKGDSGEDGPTGPDGPPGPAGTTGQRGIVGLPGQRGERGMPGLPGPGGPPGKQGSTGQSG
EKGPPGPVGVPGANGPRGDPGPDGPSGSDGPPGKDGVLGQRGDRGDHGPEGLIGPQGLPG
PPGPVGAPGDAGRRGEAGSRGPVGPPGSAGKRGLVGPQGPRGDKGDLGDHGERGQKGHRG
FTGLQGLPGPPGTTGEQGTPGIVGPSGARGPPGPIGPHGKEGYVGQPGPMGPPGTRGISG
EIGPEGPPGEPGPPGPPGPPGPPTAALDDFLGGPHDYESGPPPPPEFSEDEALPNSNSTN
TVVDPGVQATLKALSSQIDSMKSPDGSRKYPTLVCFSIKLCYNQSISDPGEYWVDPNQGS
SEDAIQVFCNMDSGETCISANPPNIPRKSWWSSSRNKPVWFGADINRGTQFAYGNKDQPS
NSVTVQMTFIRLLSKEASQTITYHCKNSVGYKDQKTGNLKKAVILKGANDLELKAEGNNR
FRYTVVEDSCAHANGNWGKTVFEYRTQKTARLPIVDIAPVDIGGTDQEFGIDIGPVCFL
NT seq 4500 nt   +upstreamnt  +downstreamnt
atgaagggctttgtgcatttaaggacttcgctttttctggtgatttctgtgactcgggtt
tttcttgttacaagtcaagatgcaaccggtggagatgacgtgaactgcaaagcggacggc
caggtgtacacaaacaaggacatctggaaaccagatccatgccggatctgtgtctgtgac
aacggccaagtcctgtgcgaagagatccactgtgatgaactgaccaactgtgagaaggtt
tacatcccagaaaacgagtgctgccccgtgtgccagacagactcttccggtggtcgtgga
accagcacttttggtggagacaggatctataagggtcaaaagggcgagcctggcgatgtc
ccccaggtcactggtatcagaggtcgcccaggacccatgggaccacccggctctccagga
gaacgaggaccacgtggaaacaaaggccggcccggactgcggggtaccgcgggttacgat
ggagagcctggtgtgcctggtcagcccggtgaacctggacctccaggacatccaacacat
tcaggatcaccaggaggtctgatgtcccaaatggcctcagggtttgatgggaaaactgga
ccacaagcaatgctgagcggctccaggggcgaagcaggaacaagaggacctcctggtcca
aacggttcccctggccaagctggaccacaggggcctcatggagacgttggagacccagga
catatgggtccgtctggccaacggggggctgagggtcctccaggaaaaccaggtgaagat
ggagaaccaggaaaaccaggaaactctggagaggttggattccccggatcagctggtcca
agagggttccctggtactcctggacctcctggtctgaagggccacagaggccacggtgga
ccgattggtcagaagggagaaactggagccgttggatccaagggggctacgggaccacct
ggacaaatgggaggccctggacctatgggtcctgctgggatgccaggagagaggggacgc
gttgggcccggcggtatcgcgggcaaacgtgggccacctggtaatgttggaaaacctggt
ccgatgggtcctctaggtctcagcggcccctccggatatccagggggcccaggaatgaag
ggtcaacctggtccaacaggagtccgtggtcctgaaggccctcagggacagagaggagaa
acaggtcacctgggcagacctggaccagtcggcatcaggggacccatgggtacagacggt
gggacgggaaccaaaggaccagtggggaaccttggtccacaaggtcaaggaggacacgct
ggaccccctggaccaccaggacctcagggaagcaccgggcagcctggtatcaaaggacaa
ctgggagatgttggtgttcccgggtttaaaggagaggcgggaccaaaaggagaacctggt
ccaccaggttctcagggtgtgattggacctcagggtgaggaagggaagagagggcttcgt
ggagaccctggttctgtcggaccccctggtcctgttggtgagagaggagctcctggtaac
agagggttccccggtgctgatggacttccaggacctaagggtgctcaaggagaccgtggt
atatctggaccaggaggccccaaaggttccctgggagaccctggtcgtacaggagaacct
ggtctaccaggtgctaggggactcactggcacccccggagtccagggagcagaaggcaag
ccaggacctctgggcgccccgggtgaggacggacgtccaggacctgcagggtccatcgga
accagaggacccgccggaacaatgggggttccaggccccaagggcttcaacggtgaccca
ggaaagacaggtgaacaaggatctgcaggagttccaggtcaaaggggtcctccaggaaaa
gacggtgaagtgggcccagccggtcctccaggcccgtctggcgtggccggagacagagga
gagcagggaccacctggtgtgaatggattccaggggctgcctggaaatcaaggtcctcca
ggtgaacctggaaaaccgggtgatcaaggaattcctggagaacttggtgccgtcggtcag
atcggacccagaggagaacgtggaataccaggagaaagaggagacttgggcccaactggt
ctgcaaggaccaaaagggatccctggtgcacctggtcctgacggctcaaagggaagtcct
ggtccccctggtgccctgggtgatgtgggtcctccaggtcttcagggaatgccgggagag
aggggcatctctgggccccctgggcctaaaggagacagaggagcgatcggtgagaaagga
tccgagggtacagcagggaacgacggagccaggggggctcctggtcctgtcggcccagta
ggatctgctggacccagtggagagaagggtgaacctggacccaaaggaccagctggacct
cctggatccagaggaatgcatggagccagaggagaacctggtccaatcggtgccgtcggt
ttcgctggacctcagggtcctgatggtcaacctggtgtgaagggagagcctggagagcca
ggccagagaggagacgctggatctccaggacctcagggtgcagctggagctcacggacct
catgggcccgtcggtgtcgccggactcaaaggcggaagaggaacacagggggcgccaggt
ccaactggtttccccgggtctgcaggaagagtgggaccaccaggcccaactggtccactt
ggagaacctggagctattggacctccaggaaaagagggacctcgtgggctgcgtggagat
catggacctcctggaagacaaggagagcggggcccagcaggtccaccaggcagtgctggg
gacaaaggagattctggagaagacggacctacgggccctgatggtcctccaggcccagct
ggaaccacaggacagagaggcattgtgggtcttcctggtcagaggggagaacgtggaatg
ccaggtcttccaggaccagggggtccaccaggcaaacaggggtctacaggacaatcagga
gagaaaggccccccaggtcccgttggtgttccaggtgctaatggaccccgtggtgatccc
ggtcctgatggaccctcaggttctgatggacctccaggaaaggacggcgttcttggacaa
agaggagacagaggagaccacggtccagagggattaattggaccacagggacttcctggt
cctccaggtcctgttggtgcaccaggtgatgccgggaggcgaggagaggctggttctaga
ggaccagtgggtccaccgggctcagctggtaagagaggactagtgggacctcaaggacca
agaggagataaaggtgatctgggagatcatggagaacgaggtcagaaaggtcatcgtggt
ttcactggtttgcagggtcttccaggacctccgggaaccaccggtgagcagggaactcca
gggatcgttggacccagtggagccagagggccccctggacctattggaccccatggaaag
gaagggtatgttggacaaccagggcccatgggacctcctggaacccgtggcatcagcgga
gaaattggaccagaggggcctcctggagagccaggtcccccaggtcctccaggtccccca
ggacctcccaccgctgccttggatgatttcctgggcggccctcatgattacgaatccggt
ccacctcctcctcctgagttcagtgaggacgaagctctgcccaacagtaactccaccaac
acggtggtggaccccggcgtccaggccacgctgaaggccctcagcagccagatcgacagc
atgaagagcccagacggcagcaggaagtaccctaccttagtttgtttctctataaaactg
tgctataatcaaagtatttctgatccaggagagtactgggtggatccgaaccaaggcagt
tctgaggacgccatccaagtcttctgtaacatggacagcggggagacctgcatctcagcc
aatccacccaacattccccgtaaatcctggtggagctcctccaggaacaaacctgtgtgg
tttggagccgacatcaaccgaggaacacagtttgcgtacggcaacaaagaccagccgtcc
aactcggtcacggtgcagatgaccttcatccgtctcctgtccaaggaggcgtctcagacc
atcacctaccactgcaagaactctgtgggctacaaggaccagaagacgggcaacttgaag
aaggccgtgatcctgaaaggcgccaacgacctggagctgaaggcagaaggaaacaaccgc
ttcagatacacagtcgtggaggactcgtgcgctcacgcaaacggcaactggggcaaaaca
gtgtttgagtacaggacacagaaaacagcaagacttccaatagtggacattgctcctgtg
gacattggtggcacagatcaagagtttggcatcgatatcgggccggtgtgcttcctgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (61)   
   KEGG ORTHOLOGY (1)   
   RefGene (57)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (71)   

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