KEGG   Clostridium septicum: CP523_09720
Entry
CP523_09720       CDS       T06069                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
csep  Clostridium septicum
Pathway
csep03030  DNA replication
csep03410  Base excision repair
csep03420  Nucleotide excision repair
csep03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CP523_09720
   03410 Base excision repair
    CP523_09720
   03420 Nucleotide excision repair
    CP523_09720
   03430 Mismatch repair
    CP523_09720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csep03032]
    CP523_09720
   03400 DNA repair and recombination proteins [BR:csep03400]
    CP523_09720
Enzymes [BR:csep01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CP523_09720
DNA replication proteins [BR:csep03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CP523_09720
DNA repair and recombination proteins [BR:csep03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CP523_09720
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CP523_09720
   MMR (mismatch excision repair)
    DNA ligase
     CP523_09720
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CP523_09720
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT DNA_pol_lambd_f HHH 5_3_exonuc BRCT_2 Cdd1 DNA_ligase_ZBD YhfH PADR1_Zn_ribbon RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: AYE34680
UniProt: A0A9N7PJI1
Position
2150373..2152364
AA seq 663 aa
MDKKQRINELVEELNKYAYEYYSLDNPSVSDKEYDSKYDELTKLEKEIGYVLPYSPTLRI
GDRVLEGFNKYTHKGRLWSLDKAQSFEEVKEWHNRNVKFVNEMNANGEDLPPLRYVLTKK
FDGLTVNLTYDENGILVVAATRGNGEIGEEVTAQVQTIKSIPLKIDCSDVFEIHGEAIMT
AEAFEKYNKTTENPLKNLRNGAAGALRNLNVKETAKRNLSAFFYDIGYKEGAEFKNYEEM
LEFIKSKGFPMDDYIKYCNTMDEVEKEIEYIKDIRFDLNYDIDGVVIAIDDIRTRELLGY
TIKFPKWAIAFKFEAQEATTKLLDVEWNVGRSGRVGPTAILEPVELAGVTVKRATLNNLD
DIRRKGVRIGADVFVRRSNDVIPEIMGVVEESLNGTEEINVPKVCPACGGHIVQQGAHYF
CENTLSCKPQMVKSIVHFASRDAMNIEGFSEKTAEQLFEKLDIKSISELYKLEKESLIQL
EKFGPKKAQNLLDAVEKSKNCELYRFIYALGIPNVGVKTAKDLVNKFKSIEGLKNAKFEE
LVEVQDVGDIVARCVLEFFKEEKVLATINELFELGVNPLFEEKEIIESPFQGKTVVVTGT
LKNYSRTSIKEKLEGFGAKVSGSVSKKTDYVIAGEEAGSKLTKAQDLGVKVLSENEFEDM
IKG
NT seq 1992 nt   +upstreamnt  +downstreamnt
atggataagaaacaacgtataaatgaacttgtagaagagttaaataaatatgcatatgaa
tattattctttggataatccgtctgtatcagataaagaatatgattctaaatatgatgaa
ctaacaaagttagaaaaagaaataggatatgtattgccatattctcctacattaaggatt
ggagatagagttttagaagggtttaacaaatatactcacaaaggtagactctggagttta
gataaggctcaaagttttgaagaagttaaagagtggcataatagaaatgtaaaatttgtt
aatgaaatgaatgctaatggagaagatcttccaccattaagatatgttcttacaaagaaa
tttgatggattaacagtaaatcttacgtatgatgaaaatggtatattagttgtagctgcc
acaagaggaaatggtgaaataggagaagaggttacggcacaagtacaaacaataaaatca
atacctttaaaaatagattgtagtgatgtatttgaaattcatggtgaagctataatgaca
gcagaagcttttgaaaagtataataaaacaactgagaatcctcttaaaaatttaagaaat
ggtgcagcaggtgcattaagaaatttaaatgttaaagaaactgctaagagaaatctttca
gcttttttctatgatataggatataaagaaggtgctgaatttaaaaattatgaagaaatg
cttgaatttataaaatctaagggattccctatggatgattatattaagtactgcaatact
atggatgaagtagaaaaagaaatagagtatataaaagatataagatttgatttaaattat
gatattgatggagtagtaatagctatagatgacataagaactagagaattacttggatat
actattaagtttcccaaatgggcaattgcttttaaatttgaggcacaagaagctacaaca
aaacttctagatgtggaatggaatgttggaagaagtggtagagttggaccaactgcaata
ttagagcctgtcgaattagcgggagttacagttaaaagagctacactaaataacttggat
gatataagaagaaaaggtgtaagaattggtgccgatgtatttgttagaagatctaatgat
gttattccagaaataatgggagtagtagaagaaagtttaaatggaacagaagagataaat
gttccaaaagtttgtccagcttgtggagggcatatagttcagcagggagcacattatttc
tgtgagaatactttgtcatgtaagccacaaatggttaaaagtatagtacattttgcttca
agagatgccatgaatatagaaggtttttccgaaaagacagcagagcaattatttgaaaaa
ttagatataaagtcaatatcagaattatataagttagaaaaagaatctcttatacaatta
gaaaaatttggacctaagaaagcacaaaatcttttagatgcagttgaaaaaagtaagaat
tgcgaactttatagatttatatacgcactaggaataccgaatgtaggagtaaaaactgct
aaagatttagtaaataagtttaagtctatagaaggattgaaaaatgctaaatttgaagaa
ttagtagaagttcaagatgtaggagatatagttgctagatgtgttcttgagttttttaaa
gaagaaaaagtattggctacaattaatgaattatttgaattaggagttaatcctttattt
gaagaaaaagaaataatagaaagtccttttcaaggaaagacagtagttgtaacaggaaca
ttaaaaaattattcaagaacttctataaaagagaaattagaaggttttggtgctaaagtt
tcaggtagtgtgagtaaaaagacagactatgtaatagcaggagaagaggcaggatcaaaa
cttacaaaggcacaagatttaggtgttaaagttctatcagagaatgaattcgaagatatg
ataaaggggtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (34)   

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