KEGG   Clostridium saccharolyticum WM1: Closa_1102
Entry
Closa_1102        CDS       T01288                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
csh  Clostridium saccharolyticum WM1
Pathway
csh03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:csh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Closa_1102
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csh03400]
    Closa_1102
Enzymes [BR:csh01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Closa_1102
DNA repair and recombination proteins [BR:csh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Closa_1102
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 UvrD_C_2 SH3_13 HHH_5 AAA_11 Viral_helicase1 PhoH PIF1 AAA_22 nSTAND3 UvrD-helicase ABC_ATPase ABC_tran AAA_16 DEAD NTPase_1 T2SSE cobW AAA_12 AAA_28 AAA_18 Helicase_RecD 5_3_exonuc AAA_14 AAA_17 TrwB_AAD_bind ATPase_2 UvrD_C HHH_2 AAA_23 AAA_25 AAA_29 SLFN-g3_helicase
Other DBs
NCBI-ProteinID: ADL03718
UniProt: D9R7I9
Position
1199595..1201868
AA seq 757 aa
MSYIGTYDGTIFYNPANKYCIISIKTKGQNVPVQARSTRQYRDHLIRFVAVGYELPRTDA
VQLELDGEWKSGKYGQQLQVEQWHEIVPRTADGVEGYLSSGLIKGIGPKVAAEIVSRFGV
GTLDILEKHPERLLEVKGITENKLEDIKASYAESRMLQDLMTLLSPYKVTPKTALKIYQC
FGPDSVEVLQRNPFELCTISGFGFRRVDAIVQKNGGDLHAPMRIRGGIVCTLDEIRGKQG
HLYLDKEGLVNLSLKLLNEKIPLPGMRLHRQEVEAVLQEMILNGAVVMSRDNIYLPRIFE
LEDETARQIAKRLVVASMTEHIAPLLERIKTEMGVSLSGKQDKAVHMVFRHNISIITGSP
GTGKTTVLKTILEVYRHLHPDGKIMLMAPTGRASRRMAESTGFEDAKTMHSGLGLGSEED
ESSRKKEAPQLDADLIIVDEFSMVDMWLAKQFFTRLKDGCRVVLVGDADQLPSVGAGNVF
HELIECGLVPVTVLNEIFRQANDSLIAYNAKFINEGSTKLYYGPDFVFHSCDNQEEAAEK
IMERYCNEIAESGIERVLILSPFRSEGSVSAEQLNESIREMVNPFCSAEEEIRLGPKNFR
IGDRIMQTKNTEKVSNGDLGFIRYIKDTEDGKRIGVDFGPNRELEYSVEDIINLDLAYAT
TIHKAMGSECETVIMPLIKAHSVMLYRNLLYTAITRARKRVVLVGQKAVLFMAIHRNEIS
KRNTSLGERICLYYRAFAKSAGIMIPAALEEKLKNAG
NT seq 2274 nt   +upstreamnt  +downstreamnt
ttgagctatatcggtacttatgatgggaccattttttacaatcccgccaataaatactgc
atcatcagcataaagacgaaaggccagaacgtacctgttcaggcccggtcaaccaggcag
tatcgggatcacctgattcgatttgttgctgtgggttacgaactgccccgcaccgatgcg
gtccaactggagttggatggtgaatggaaaagcggcaagtacggtcaacagcttcaagta
gagcaatggcatgaaattgttccgcggacggcagacggcgtggagggttatttgtcttcc
ggcctaatcaaaggtattggtcccaaagtggcagctgaaattgtatcccgctttggagtg
ggaacgctggatattctggaaaagcatccggaacgtctgcttgaagtcaagggcattaca
gaaaacaagctggaggacattaaagcttcttatgcagaaagccgtatgctgcaagatctt
atgacgctgctgtctccatacaaggtaactccgaaaacggcattgaaaatctaccagtgt
tttggaccggacagcgtggaggtgttgcaaagaaatccctttgaactctgcactatttcc
ggttttgggttccgacgtgtggatgccattgttcagaagaacggtggtgacttacatgcg
cccatgcgtatcagaggcgggatcgtttgcaccctggatgagattcggggcaaacaaggt
catctgtatttggacaaagagggcctggtcaatttgagtttaaaattattgaatgaaaag
ataccccttcctgggatgcgcctgcatagacaggaagtcgaggctgtgttacaagaaatg
attttgaacggtgcggtggtaatgtctagggataatatctacttacctcgtatttttgag
ttggaggatgaaactgcccgacagattgctaagaggctggttgtggcttccatgacggag
catatcgccccattgttggaacgaatcaagacggaaatgggagtttccctttctggaaag
caggacaaggctgtgcatatggtattccggcataacatttccatcattactggttctccc
ggtactggtaagacaacggtactcaaaaccattttggaggtgtatcggcatctacacccg
gatggaaaaatcatgttgatggctccaaccggccgtgccagccgccgcatggcagaaagc
acaggatttgaggatgccaaaacaatgcacagtggtttgggtcttggaagtgaggaagat
gaaagcagccggaaaaaagaggcccctcagttggacgcagatctgattatcgtggacgaa
ttttccatggtggatatgtggctggcaaagcaattttttacaaggctaaaagacggctgc
cgggtggtgctggtgggtgatgccgaccagttgcccagcgtgggggccggtaatgtgttc
catgaactgattgagtgtggtttggtgccggtgacggtactgaatgaaatttttcgtcag
gctaatgacagcctgattgcctataatgcaaaattcatcaatgagggcagtacaaagctg
tactatggtccggattttgtttttcattcctgcgataaccaagaggaggccgcagaaaaa
attatggagcggtactgcaatgaaattgcggaaagcgggattgaacgggtgctgattttg
tctccgttccgttcagaaggttctgtatctgccgaacagctcaatgagtctattcgtgaa
atggtcaatcctttctgctctgcagaggaggaaatcaggctggggccgaagaacttccgt
attggcgaccgcatcatgcagaccaagaacacagaaaaagtatccaatggcgacctgggt
tttattcggtacatcaaggatactgaggatgggaaacgaattggcgtagactttgggcca
aaccgggaattggagtacagtgtagaggatattattaatttggatttggcctatgccacc
acgattcataaagcgatgggatcggagtgcgaaactgtcattatgccgctgatcaaagca
cattcggtaatgctttatcgcaatctgctttatactgccattacccgtgcaagaaagcgt
gtggtgctggttgggcagaaagcggtattgttcatggcaattcaccgcaacgaaatcagc
aagcgcaatacatccttgggagagcgtatctgcctgtattaccgggcatttgccaagagc
gcaggtatcatgattcccgctgccttggaggaaaaattgaagaatgcaggttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (35)   
   Pfam (35)   
All databases (45)   

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