KEGG   Clostridium saccharolyticum WM1: Closa_1861
Entry
Closa_1861        CDS       T01288                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
csh  Clostridium saccharolyticum WM1
Pathway
csh03030  DNA replication
csh03430  Mismatch repair
csh03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:csh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Closa_1861
   03430 Mismatch repair
    Closa_1861
   03440 Homologous recombination
    Closa_1861
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csh03032]
    Closa_1861
   03400 DNA repair and recombination proteins [BR:csh03400]
    Closa_1861
Enzymes [BR:csh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Closa_1861
DNA replication proteins [BR:csh03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Closa_1861
DNA repair and recombination proteins [BR:csh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Closa_1861
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NI HHH_6 tRNA_anti-codon RNase_H_2 DNA_pol3_a_NII DEDDh_C HHH_3 PCMT 7TM_transglut
Other DBs
NCBI-ProteinID: ADL04444
UniProt: D9QZZ3
Position
2005124..2009674
AA seq 1516 aa
MAKKFLEVFPSLHITDELRELLNLVEVEKVTLGRDRSSIRIYLMSPRLIHKQNIYGLEKG
IKDQLFPSKRLTIKIIERFCLSGQYTPQKLLKAYRESLLTELKNYSIIEYNMFRKAEFKF
PEPDLLRLTVEDTIVTHEKAGDLKRILEKIFHERCGMPVEIQYDYIVPKENELAKQKELQ
MQREVEEIVSRTSLAFRKGGDQEEYNSGNAGGSAGASMMEASSAEFLASGDMASAATGQS
PVPSLRMGGKKESPKSGDFDAGKKEWKDFKKGGSFYGRRSDNPDVLYGRDFDGEIIEIEK
IDGEIGEVVIRGKILTVDSRELRSQKTIMIFDVTDFTDTITVKMFAREEQLEDLKAAVVQ
GSFIRLKGVTTIDKFDGELTLGSVVGIKKSEDFTGKRMDNSLEKRVELHCHTKMSDMDGV
SEVKDIVKRAKRWGMPAIAITDHGCVQAFPDANHALDKGDDFKLIYGVEGYLVDDLKQLV
DNSKNQSLSDSYVVFDIETTGFSSSRNRIIEIGAVKVENGTIADKFSTFVNPDVPIPFEI
EKLTGINDNMVLPYPKINEILPRFLEFCGNSVLVAHNAAFDVSFIAYNAARLNLAFEPTV
IDTVALARLLLPNLNRYKLDTVAKALVVSLENHHRAVDDAGCTAEIFVAFVKMLRERGVE
TLDELNGLSTMSADMIKKLPTHHVIILAANDVGRVNLYRLISYSHIDFYARRPRIPKSVL
NQNREGLIVGSACEAGEIYQALLRGVSDAELAKLVNFYDYLEIQPLGNNGFMLRDEKSSV
KSEQDLIEINQRIVTLGEQFGKPVCATCDVHFLDPEDEVYRRIIMAGQGFKDSDDQAPLY
LRTTEEMLKEFQYLGPNKAEEVVIKNTRKIADMCEKISPVRPDKCAPVIENSDEDLRKIC
YDRAYAIYGENLPSIVIERLERELHSIISNGFAVMYIIAQKLVWKSNEDGYLVGSRGSVG
SSFVAYLSGITEVNSLSPHYYCASCHYYDFDSDEVKQFSGMAGCDMPDKVCPVCGLPLAK
DGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYTEVIFGKGQTFRAGTIGTLADKTA
FGYVKNYYEEHGVRKRNCEISRIVQGCVGVRRTTGQHPGGIIVLPHGEEIYSFTPVQRPA
NDMTTMTVTTHFDYHSIDHNLLKLDILGHDDPTMIRMLQDLIGFDPVKDIPLDSKEVMSL
FQNTSALGITPEDIGGCKLGALGVPEFGTDFAMQMLIDTQPKYFSDLVRIAGLAHGTDVW
LGNAQTLIQEGKATIQTAICTRDDIMIYLISMGIEEGLSFSIMESVRKGKGLKTEWEEEM
TAHGVPDWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYASFFSIRANGFSY
ELMCQGRDKLEHYLADYKKRMDTLSKKEQDTLRDMRIVQEMYARGYDFMPIDIYRAKARH
FQIIDGKLMPSLSSIDGLGEKAADAIVDAGKDGAFLSREDFRNRTKVSKTVCDLMGDLEL
LFDLPESNQLSLFDLG
NT seq 4551 nt   +upstreamnt  +downstreamnt
atggcaaagaaatttttggaggtttttccaagcttacatatcacagatgaattacgggag
cttttaaatctggtggaagtggagaaggtcactttaggcagggatagaagctctattcgt
atttatctgatgagtccaagacttatacataaacaaaatatttatggcctggaaaagggg
atcaaggatcagctttttccttccaagcggcttaccattaagattattgagcggttttgc
ctgtctggccagtacaccccccagaagcttttaaaggcctatcgggaaagcctgttaacg
gagcttaaaaattacagcattatagaatataacatgttccgcaaagcggaatttaagttt
ccggagccggaccttcttcggctgacagtagaagatacgattgttacccatgaaaaagcc
ggcgacttaaaacggattctggaaaagatttttcatgaacgctgcggtatgccggtggag
atccagtacgattatatagtccccaaagaaaatgaactggcaaagcagaaagagcttcag
atgcagcgggaggtggaggagatcgtaagcaggacctctctggcgttcagaaagggagga
gaccaggaggagtataactcaggaaatgcgggaggaagtgccggggcttccatgatggag
gcttcttccgcagaattcctggcttcaggggatatggcctctgcagccaccggccagtct
cctgtaccttcgctgcgtatgggcggaaagaaggaatctcctaagtccggagacttcgat
gccgggaaaaaggagtggaaggattttaaaaagggcggcagtttttacggacgacgctca
gataatcctgacgtactttacggccgtgattttgatggggaaatcatagaaatagaaaaa
attgacggagaaatcggcgaagtggtcattcgaggcaagattttaaccgtagacagcaga
gaactgagaagccagaagaccatcatgatctttgatgtgacggattttacggatacgatc
acagtgaagatgtttgccagagaagaacagctggaggatttaaaggctgcagtggtgcag
ggcagttttattcgcctgaagggagttacaaccattgataaatttgatggggagctgact
ctcggttccgtggtgggaatcaagaaatcagaggattttaccggaaagcggatggacaac
agccttgaaaaacgggtggagcttcactgccatacgaaaatgagcgatatggatggcgtt
tctgaggtcaaggacattgtgaaacgggcaaaacggtggggtatgcctgccattgccatc
acagaccatggatgtgtccaggcattccctgatgccaatcatgccctggataaaggagat
gactttaagctgatttacggcgtagaggggtatctggtggatgatttaaagcagcttgta
gataattccaaaaatcagagcttatcagattcctatgtggtttttgatattgagacaacg
ggctttagctcttccaggaaccggatcattgaaatcggtgcggtaaaggtggaaaatggt
acgattgcagataaattcagtacctttgttaacccggatgtaccaattccctttgaaatt
gagaagcttacaggaatcaatgataacatggttcttccttatcctaaaatcaatgagatc
ctgcccaggtttctggaattctgcgggaattctgtgctggtagcccataatgcagccttt
gacgtaagctttatcgcttataatgcagcgaggcttaacctggcttttgagcctaccgtc
atcgatacggtggctcttgcaagacttctccttcccaatcttaaccggtataaactggat
acagttgcaaaggcgctggtcgtatcccttgaaaaccatcacagggcagtggatgatgca
ggctgtacagctgaaatattcgtggcatttgtgaaaatgctccgggaacggggggtggag
actcttgatgagcttaacgggctaagcaccatgtctgcggatatgatcaaaaagcttccc
acccatcatgtcatcatactggctgccaatgatgtgggaagagtgaacctttatcgtctg
atttcatattctcatattgatttttatgcaagaaggccaaggatccccaaaagcgtgctg
aaccagaaccgggaaggcctgatcgtaggctctgcctgtgaggcaggtgagatatatcag
gctcttcttcggggcgtttccgatgcagagttggcaaagctggtaaatttttatgactat
ctggaaatacagcctttgggaaacaatgggttcatgctcagagatgagaaaagttctgta
aagtcagagcaggatttaattgagatcaatcaaaggatcgtgacccttggggagcagttt
gggaagcctgtctgcgcaacctgtgatgttcattttctggatccggaggatgaggtttac
cgaaggatcattatggcaggccagggttttaaggattctgatgaccaggcacctttgtat
ttaaggactacagaggaaatgctgaaggaattccaatacctgggaccgaataaggcggaa
gaggtggtaataaagaatacaaggaaaattgccgacatgtgcgaaaagatctctcctgta
cgcccggataagtgcgcgccagtgattgaaaattctgatgaagatttaagaaagatctgt
tatgacagggcctatgcaatctatggagaaaaccttccgtccattgttatagagcggttg
gaaagagaacttcattccattatatccaatgggttcgcggtcatgtatatcatcgcccag
aagctggtttggaaatccaatgaggatggatatctggtaggctcaagaggttctgtcgga
tcttcctttgtggcttatctgtcagggattacggaggtaaattccttaagccctcattac
tattgtgcttcctgccattattatgattttgattcggatgaggtaaaacagttttccggt
atggcaggctgcgatatgccggataaagtttgcccggtgtgcgggctccccctggcaaag
gacggatttgatattccctttgagaccttcctgggctttaagggggacaaggagccggat
attgacttgaatttctccggagaataccagagtaaggcccatgattatacggaggtcatc
ttcggcaagggtcagacctttcgggcaggtaccattggtaccctggctgataaaacggct
ttcggttatgtgaaaaattattatgaagaacatggggtcagaaaacgaaattgtgaaatc
agcagaattgtacagggctgtgttggtgtcaggaggacaacagggcagcatcctggcgga
atcattgtgcttccccatggggaggaaatttactcctttaccccggttcagcggcctgcc
aacgatatgaccaccatgacagtaaccactcattttgattaccattccattgatcacaac
ttattaaagcttgatattctgggacacgacgatcctaccatgatccgtatgcttcaggac
ttaatcggctttgatccggtaaaggatattcccctggacagcaaggaagtaatgtctctg
ttccagaacacttcggctttgggaattacgccagaggatatcggcggatgtaagcttgga
gctttgggtgttccggagtttggtacagactttgccatgcagatgctgatcgacacccag
ccgaagtatttctccgatctggtgcgcattgcaggtcttgcccatggtacggatgtgtgg
ctggggaatgcccagaccctgatccaggaagggaaggctaccattcagacggcaatctgt
acccgagatgatattatgatttatttaatatcaatgggtatcgaagaaggactttccttt
tccattatggagagcgtacgaaaaggaaaagggttgaagacagagtgggaagaggagatg
actgcccacggagttccggactggtatatatggtcctgtaaaaagattaagtacatgttt
ccgaaagcccatgcggctgcctatgtaatgatggcatggagaatcgcttattgtaaggtg
ttttatccactggcttattatgcctcttttttcagcatccgggccaacggcttcagctac
gagctgatgtgccagggacgggataagctggaacactacctggctgattataaaaagcgg
atggacactctttcaaaaaaggagcaggatactctgagggatatgaggatcgttcaggaa
atgtacgccagagggtatgattttatgcccattgacatttaccgtgcaaaggctaggcat
ttccagatcattgacggcaagctgatgccatccttaagcagcattgacggactgggagaa
aaggcggcggatgccattgtagatgctggaaaggatggagccttcctgtccagggaggat
ttcagaaacaggacaaaggtcagcaaaactgtttgcgatttaatgggagatttggaactc
ctttttgaccttccggaatccaaccagttgtctctgtttgacctgggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (26)   

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