KEGG   Cronobacter sakazakii ATCC 29544: CSK29544_00213
Entry
CSK29544_00213    CDS       T03903                                 
Name
(GenBank) RNA polymerase associated protein RapA
  KO
K03580  ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
csj  Cronobacter sakazakii ATCC 29544
Brite
KEGG Orthology (KO) [BR:csj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csj03021]
    CSK29544_00213
Transcription machinery [BR:csj03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    RNA polymerase-associated proteins
     CSK29544_00213
SSDB
Motif
Pfam: RapA_C Tudor_RapA Tudor_1_RapA SNF2-rel_dom Helicase_C ResIII DEAD AAA_34
Other DBs
NCBI-ProteinID: AKE93178
Position
221092..223998
AA seq 968 aa
MPFTLGQRWISDTESELGLGTVVAIDARMVTLLFPATGENRLYARNDSPVTRVMFNPGDT
VTSHEGWQLKVDEVKEENGLLIYIGTRLDTLEENVALREVFLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKYQSEQYRMPWSGLRGQRTNLIPHQLNIANDVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQLLAGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQH
ESDNPFDTEQLVICSLDFVRRNKQRLEHLCDAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAERVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLL
AGTHLNDEQLNTLSELIGEQDIEPLLQTANSDRDGAESARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPQRELHTIKLPLPTQYQTAIKVSGIMGTRKSAEERARDMLYPEQIYQEFEGD
SGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASQLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRAIYDSVYEQLIGYLAAPENT
EGFDALIQACRKQHDELKAQLEQGRDRLLEIHSNGGEKAQQLADAIAEQDDDTGLVNFAM
NLFDIVGINQDDRGEHMIVLTPSDHMLVPDFPGLPEDGCTITFNRDVALSREDAQFITWE
HPLIRNGLDLILSGDTGSCTISLLKNKALPVGTLLLELIYVVEAKAPKQLQLNRFLPPTP
VRMLLDKNGNNLAGQVEFESFNRQLSAVNRHTGSKLVNAVQQEVHAILQGGEAQVEKAAR
ELIDAARQEADDKLSAELSRLEALRAVNPNIRDDELAAIEHNRQQVLENLNQASWRLDAL
RLIVVTHQ
NT seq 2907 nt   +upstreamnt  +downstreamnt
atgccttttacacttggtcaacgctggatcagcgatacggaaagcgaactgggactgggc
accgtggtggcgattgatgcccgcatggtgactctgcttttcccggctaccggtgaaaat
cgtctgtatgcccgaaatgactccccggtcacccgcgtaatgttcaacccgggcgatacc
gtgaccagccacgaaggctggcagttgaaagtggatgaagtaaaggaagaaaacggctta
cttatttatatcggcacccgtctggatacgcttgaggaaaatgtcgcgctgcgcgaagtg
ttcctcgacagcaaactggtgttcagcaaaccgcaggaccgcctgttcgccggtcagatt
gacagaatggaccgctttgccctgcgctatcgcgcccgcaagtaccagagcgaacagtac
cggatgccgtggagcggcctgcgcggccagcgcacgaaccttatcccgcaccagctcaat
atcgccaatgacgtgggccgccgccacgcgccgcgcgtgctgctggccgatgaagtgggt
ctcggcaaaaccatcgaggccgggatgatcattcatcagcagctgcttgcaggcgcggcc
gagcgcgtgctgattgtcgtgccggaaacgctgcaacaccagtggctggtggagatgctg
cgccgcttcaacctgcgcttctcgctgtttgatgacgagcgttacgccgaagcccagcat
gaatccgacaacccgttcgacaccgaacaactggtgatctgctcgctggatttcgtgcgc
cgcaacaagcagcgccttgagcatctgtgcgacgccgagtgggatctgctggtggtggat
gaagcccatcacctggtctggagcgaagatgccccgagccgtgaatatcaggcgattgaa
cagctggccgaacgcgtgccaggcgtactgctgctgaccgcgacgccggaacagctcggt
atggagagccacttcgcgcgtctgcgcctgctggacccaaaccgtttccacgatttcgag
cagtttgtcgaagaacagcagaactatcgcccggtggcggacgccgtggcgctgctgctg
gcgggcacgcacctgaacgatgaacagctcaacaccttaagcgaactgattggcgaacag
gatatcgagccgctgctgcaaaccgccaacagcgaccgcgacggcgccgaaagcgcgcgt
caggagctggtctccatgctgatggaccgccacggcaccagccgcgtgctgttccgtaac
acccgcaacggcgtgaaaggcttcccgcagcgcgagttgcacaccattaagctgccgctg
ccgacgcagtaccagaccgcgattaaagtctctggcatcatgggcacgcgtaaatctgcc
gaagagcgcgcgcgcgatatgctctacccggagcagatttatcaggaatttgaaggcgac
agcggcacctggtggaacttcgacccgcgcgtggagtggctgatgggctatctgaccagc
caccgctcgcagaaagtgctggtgatttgcgccaaagccgccaccgccctgcaactggag
caggtgctgcgcgagcgagaaggcatccgcgccgccgtgttccatgaaggcatgtcgatt
atcgagcgcgaccgcgcggcggcctggtttgctgaagaagataccggcgcgcaggtgctg
ctgtgctcggaaatcggctccgaaggccgcaacttccagttcgccagccagctggtgatg
ttcgatctgccgttcaaccccgatctgctggaacagcgtatcggccgtctggaccgtatc
ggccaggcgcatgatatccagatccatgtgccgtaccttgagaaaaccgcgcaatccgtg
ctggtgcgctggtatcacgaagggctggacgcgttcgaacacacctgccctaccggacgc
gccatttatgacagcgtctatgagcagctgattggctacctcgccgccccggagaacacc
gaaggctttgacgcgttgattcaggcgtgccgcaaacagcacgatgaactgaaagcgcag
cttgagcagggccgcgaccgcctgctggagatccactctaacggcggcgaaaaagcccag
cagctggctgatgccatcgctgaacaggatgacgatacgggcctggtgaatttcgccatg
aacctgttcgacatcgtcggcatcaatcaggacgatcgcggcgaacatatgattgtgctg
acgccatccgatcatatgctggtgccggatttccccggcctgccggaagatggctgtacc
attacgtttaaccgcgacgtggcgctgtcgcgcgaagacgcgcagttcatcacctgggag
cacccgcttatccgcaacggtctggatctgatcctttccggcgacaccggcagctgcacc
atttcgctgctgaaaaacaaagcgttaccggtcggcacgctgctgctggaactgatttac
gtggtcgaagccaaagcgccgaagcagttgcagcttaaccgcttcctgccgccgacgccg
gtccgcatgctgcttgataaaaacggcaataacctggcaggccaggtggagtttgaaagc
ttcaaccgccagctcagcgccgtgaaccgccataccggcagcaagctggtgaacgcggtg
cagcaggaagtgcatgcgattctgcagggcggcgaagcgcaggtggagaaagcggcacgc
gagcttatcgacgcggcgcgtcaggaagccgatgacaaactctccgccgagctgtcgcgt
ctcgaagcgctgcgcgccgtgaacccgaatattcgcgacgacgaactggcggcgattgag
cataaccgtcagcaggtactggagaatcttaaccaggcgagctggcgactggatgcgctg
cgtcttatcgtagtgactcatcagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (14)   

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