KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_11483
Entry
COCSUDRAFT_11483  CDS       T02914                                 
Name
(RefSeq) prokaryotic type I DNA topoisomerase
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    COCSUDRAFT_11483
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csl03032]
    COCSUDRAFT_11483
   03400 DNA repair and recombination proteins [BR:csl03400]
    COCSUDRAFT_11483
Enzymes [BR:csl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     COCSUDRAFT_11483
DNA replication proteins [BR:csl03032]
 Eukaryotic type
  DNA Topoisomerases
   COCSUDRAFT_11483
DNA repair and recombination proteins [BR:csl03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     COCSUDRAFT_11483
   FA (Fanconi anemia) pathway
     COCSUDRAFT_11483
SSDB
Motif
Pfam: Topoisom_bac Toprim zf-GRF zf-CCHC zf-CCHC_5 zf-C4_Topoisom
Other DBs
NCBI-GeneID: 17045853
NCBI-ProteinID: XP_005652066
JGI: 11483
UniProt: I0ZA53
AA seq 919 aa
MQRTLTVLNVAEKNSIAKQVSAALSNNSATRGSTCSNYNPLFSFPYALNGMPCEMLFTSV
AGHLMELDFPEAFKKWHSCSPLELYGAPVLKCVPQDKKLVERNLKEQARKCQWLVLWLDC
DREGENIAFEVIDVCIKANPRLLIKRAKFSALVRRELERSVQNLGVPDENLSKAVDARQE
IDLRIGASFTRFQTLLLQEKFNWEEHGIHDERPIFSYGPCQFPTLGLIVQRQWEIQAHVA
EPFWYIYAMYRAPEGQSCTLHWQRDRLYDHVIATILYETCVDAPLATVTKVDARQKLRWP
PLPLATLSLQKEAITHLRLPGERMMKLAEELYQEGFISYPRTETDVFDPAYDLKALVREH
VNDARWGQHAQRIDSGEMWAAPRGGGHDDHAHPPIHPTRWSAPDANQGWDPNKRRLYEFI
VRSFLASCSKPAVGFETQVEVTIAAETFRTTGLMVKERNWMEVFPWARWGGNDNLPVFAV
NQTFMPTELLLKDGMTQPPPKMSERDLISAMERHGIGTDATVADHIQKQLDRGYALKDAA
QLFSPTALGEALVASYHKMGLSNLWQPTLRGAIEHNITEVARGLRPKQEVLDEAVQHFRG
DYIAAAGKQAMMLEEVGRFFGPRAGGGGPGEAGGALPPGDPIGACASCGLNLMLCQPAEG
TPFVACSGAPLCRQRVYFPRPTLAADISDQPCATCQLDRGGLRKISFRLRRAAIPPGFEA
DMVACVLCDQRFKDLCEACGTARPAGQRNNQARGGGGQARGRGRGPAGRCEARASVLTRC
VELLRGRGGRQGGMARGPPVCPRHGQPCLVKTSNSAANPGRTFFKCAHPSEAQECLDFMW
EDEWNGQPLGASRARRTEPRGRGGNRGHGPRGAGRQQHGGRGNAGGRLVDAATGLPLDAN
EGSCYKCGQRGHWANACPN
NT seq 2760 nt   +upstreamnt  +downstreamnt
atgcaaaggacgctaacagtcctgaatgttgctgagaagaacagcatcgccaaacaagtg
tcagctgccctcagtaacaactcggcaactcgaggaagcacctgctcgaactataatccg
ttgttctcgtttccgtacgccctcaatgggatgccatgcgagatgctgttcacatcggtg
gctggacacctcatggagctggacttcccagaggcattcaaaaagtggcattcatgtagc
ccgttagaactgtacggtgctccagtcttaaagtgtgttccacaggacaagaagcttgtt
gagaggaatctgaaggaacaggcccggaagtgccagtggctagtattgtggctggactgt
gatcgagagggggagaatattgcatttgaggtcattgatgtgtgcataaaggccaatcca
cggctactcatcaaacgggccaaattctctgcgcttgtgaggagagagcttgagcggtca
gtgcagaatcttggggtgccggatgagaacctatccaaggctgtagatgcgaggcaggaa
atagacttgcgcatcggggcttctttcacccgattccagaccctcctgctgcaggagaaa
ttcaactgggaggagcacggcatccatgatgagcggcccatcttcagctatgggccctgc
caattccccaccctgggcctcatcgtgcagcgccaatgggagatccaggcgcatgtggca
gagccattctggtacatctacgcaatgtacagggcgcctgaggggcagtcatgcactctg
cactggcagcgggatcggctgtacgaccatgtcatagccaccatcctgtacgagacctgc
gttgatgcgccacttgccaccgttactaaggtggacgctcggcagaagctgcgctggccg
ccgctgccgctggcgacgctgtcgctgcagaaggaggcgattacgcacctgcggctgccc
ggagagcgcatgatgaagctggccgaggagctgtaccaggagggcttcatctcctacccg
cgcactgaaaccgacgtctttgaccccgcctatgacctcaaggcgctggtgcgggagcat
gtgaacgacgcacgctgggggcagcatgcgcagcgcatagacagcggggagatgtgggcg
gcgccgcgggggggaggccacgatgaccacgcccacccgccgatccacccaactcgatgg
tccgcccccgacgccaaccagggctgggaccccaacaagcgccgcctgtacgagttcatc
gtgcgcagcttccttgcctcctgctccaagcccgccgttggctttgagacgcaggtcgag
gtgaccattgctgcggagaccttccgcaccaccgggctgatggtgaaggagcgcaactgg
atggaggtgttcccgtgggcgcgctggggcggcaatgacaacctgcccgtcttcgccgtc
aaccagaccttcatgcccacagagctcctgctaaaagatgggatgacgcagccgccgccg
aagatgtcggagcgcgatctgatatcggccatggagcggcacggcatcggcacggacgcg
acggtggcggaccacatccagaagcagctcgaccgcggctatgcgctcaaagacgcggca
cagctgttctcgcccacagccctgggcgaggccctggtcgcctcctaccacaagatgggc
ctctccaacctgtggcagcccaccctgcgcggcgcgattgaacacaacatcacggaggtg
gctcgggggctgcggcccaagcaggaggtgctggacgaggcagtgcagcacttccgaggg
gactacatcgctgcagccgggaagcaggcaatgatgttggaggaggttggccgcttcttc
ggcccgcgcgccggaggcggcggccccggcgaggctggcggcgcgctgccgcccggggac
ccgattggcgcatgcgcgtcgtgcggcctcaacctcatgctgtgccaaccggcagaggga
acgccctttgtcgcctgctccggagcgccgctgtgccggcagagggtgtatttccctcgg
cccacgcttgccgctgacatcagcgaccagccgtgtgccacctgccagctcgacagaggc
ggcctgcgcaagatctctttcaggctacgacgagcggccataccgccgggcttcgaggcg
gacatggtggcgtgtgtgctgtgcgaccagcgcttcaaggacctgtgtgaggcgtgcggc
acagctcggccggccggccaaaggaacaaccaagcccgcggcggcggcggccaggccagg
ggcaggggcaggggacctgcagggagatgtgaagcgagagcctcagtgttgacacggtgt
gtggaattgctcagggggcgagggggtcggcaggggggaatggcgcgagggccaccggta
tgtccccgccacgggcagccgtgcctggtcaagacctccaattcagccgccaaccccggc
cgcactttcttcaagtgtgcgcaccccagcgaggcccaggagtgcctcgacttcatgtgg
gaggatgagtggaatgggcagcccctgggggcttcacgggcacgtcggacagagccaagg
ggcaggggagggaacagagggcatgggccaaggggcgcaggccggcagcagcatggcggc
aggggcaatgcgggcggcagactcgtagatgctgccacagggctgcccctggatgcaaat
gagggatcatgctacaagtgtgggcagagaggtcattgggcaaatgcttgcccaaactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (44)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (65)   

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