KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_26843
Entry
COCSUDRAFT_26843  CDS       T02914                                 
Name
(RefSeq) hypothetical protein
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03020  RNA polymerase
csl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    COCSUDRAFT_26843
  09124 Replication and repair
   03420 Nucleotide excision repair
    COCSUDRAFT_26843
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csl03021]
    COCSUDRAFT_26843
   03400 DNA repair and recombination proteins [BR:csl03400]
    COCSUDRAFT_26843
Transcription machinery [BR:csl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     COCSUDRAFT_26843
  RNA polymerase III system
   RNA polymerase III
     COCSUDRAFT_26843
  RNA polymerase I system
   RNA polymerase I
     COCSUDRAFT_26843
DNA repair and recombination proteins [BR:csl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      COCSUDRAFT_26843
SSDB
Motif
Pfam: DNA_RNApol_7kD zinc_ribbon_13 OrfB_Zn_ribbon YjdM_Zn_Ribbon DUF6510 DZR zf-ribbon_3 DUF5816 ZnF_RZ-type DUF1451 DUF6083 HypA
Other DBs
NCBI-GeneID: 17045659
NCBI-ProteinID: XP_005652188
JGI: 26843
UniProt: I0ZAH5
AA seq 60 aa
MLPGQPQQQQYAPNSGVAYTCGDCGHENTLKPGDVIRCRECGYRILYKKRTRRVVQYEAR
NT seq 183 nt   +upstreamnt  +downstreamnt
atgctgccaggacagccccagcagcagcagtatgcaccaaacagtggtgtagcctacact
tgcggcgactgcggccacgagaacacactgaagccaggagatgtgatcaggtgcagagaa
tgcggctaccgcatcctctacaagaagaggactcgccgcgtggtgcagtatgaggcacga
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (66)   

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