KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_52414
Entry
COCSUDRAFT_52414  CDS       T02914                                 
Name
(RefSeq) DNA-directed RNA polymerase III, subunit 2
  KO
K03021  DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    COCSUDRAFT_52414
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csl03021]
    COCSUDRAFT_52414
Enzymes [BR:csl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     COCSUDRAFT_52414
Transcription machinery [BR:csl03021]
 Eukaryotic type
  RNA polymerase III system
   RNA polymerase III
    Core subunits
     COCSUDRAFT_52414
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 17045045
NCBI-ProteinID: XP_005651194
JGI: 52414
UniProt: I0Z7N1
AA seq 1170 aa
MTIASWPGDQSNGTGAYENGVHEALLADPSKLTHPIKEVADKYELLPAFLKVRGLVKQHI
DSFNYFINQEIKKIVHAKGNEKVTCDTDPNFFFKYTDIFVGRPQVEEDYITTGITPQACR
LRDMTYAAPISVDVEYTRGKEIVVRKGKNGVGAVVIGRMPLMLRSDRCVLKGKSEAQLAE
LGECPLDPGGYFVVKGAEKVILIQEQLSKNRIIIDLDSKGQVTASVTSSTHERKSKTNIV
LGRKGQLCLRHNAFTEDVNMVAVLRAMGVESDQEILALVGCEPGLAALLAPTLQEAKAMG
LFIRQQALEYLGSRVKAGKQQYSSRRSRSKVDEARDILANVVVCHIPVPQYDFQQKVIYM
AVMMRRMIAAMLDSTLIDDRDYYGNKRLELAGGLLALLFEDLFKRMNNELKRTADNTLSK
ANRASQFDAAKNLHVEMISQGMESAISSGNWTIRRFRMERKGVTQVLSRLSFIAALGMMT
RITSQFEKTRKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALMTHVTTDEEEAPLAR
LAHLLGTQPATLVSGFEYSSRGVAMVFLNGSILGIHRRPKRLVKEFRRLRRAGRVGEFVS
IFLQQDSVYIASDGGRVCRPLIICDRGVPRVTSAHTAKLKSGEWGFSDFLRNGLVEYLDV
NEENNALIALYERNCGVATTHLEIEPFTVLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMG
NIAYNQLNVMDTLLYLLVYPQRPLLTTKTIELVGFDKLGAGQNATVAVMSYSGYDIEDAI
IMNRASLDRGFGRCIVLRKYGTVLKKHQNRSQDTVVAAPLPPGQSKPTGRHKLLDEDGLA
APGEIASPGEILINKQVPMSTKDPLPHGMVSLPPSAYKPAPVSWKGPPGESCIVDKVLLT
NNDDGHTVIKTLMRHTRRPEVGDKFSSRHGQKGVVGSIVAQEDMPFSERGICPDLIMNPH
GFPSRMTVGKMLELIGSKAAVQSGRFHYGTAFGESTGLADNVDSISKTLVEHGFSYSGKD
QLTSGSSGEPLEALIFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRSRDGGLRL
GEMERDCLIGYGASMLLLERLMISSDQFQVHVCNHCGLLGYFDANVGCAVCPSTKSSDDM
STLKLPYACKLLFQELQSMNIVPRLKLAEA
NT seq 3513 nt   +upstreamnt  +downstreamnt
atgaccattgcaagttggcctggcgatcagtccaatggcactggcgcctatgagaacggc
gtgcatgaggcactgctggcagacccctccaaattaacacatcctatcaaggaggttgca
gacaagtatgagctgctgccagccttcctcaaggtgcgaggactggtgaagcagcatatc
gactcctttaattacttcatcaaccaggagatcaagaagattgtccacgccaagggcaat
gagaaggtcacctgcgacacagaccccaactttttcttcaagtacacagatatctttgtg
ggccggccgcaagtggaggaggattacatcacgacagggatcacgccgcaggcctgccgt
ctgcgggacatgacatatgcagcgcccatcagcgtggatgtggagtatacccgcggcaaa
gaaatcgtggtccgtaaaggcaagaatggtgtcggcgctgttgtcattggccgcatgccc
ctaatgctccgcagcgaccggtgcgtgctcaagggcaagtcagaagcccagcttgcggaa
ctaggtgaatgcccgctggatcctggcggctactttgttgtgaagggcgctgagaaggtc
atcctgatccaagagcagctctcaaagaataggatcatcatcgatctggacagcaagggc
caagtgacagcctctgtcacctcgtccacccacgagcgcaagtccaagaccaacatcgtg
ctgggcaggaaggggcagctctgcctgcgccacaatgccttcacggaggatgtcaacatg
gtggcggtgttgagggcgatgggggtggagagtgaccaggagattctggcgctggtgggc
tgtgagcccggcctggctgcactgctggctcccacactgcaagaggccaaggccatgggc
ctcttcatccgccagcaggccctcgagtacctagggagccgggtgaaggcagggaagcag
cagtacagcagcaggcgcagccgctcgaaggtggacgaggctcgggacatccttgccaat
gtggtcgtctgccacatccctgtcccccagtatgacttccagcagaaggtgatctacatg
gcagtgatgatgcgccgcatgattgctgcgatgctagactcgacgctgattgacgaccgg
gactactacggcaacaagcggctggagctggcaggcggcctgctggcactgctcttcgag
gacctcttcaagcgcatgaacaacgagctcaagcgcacggcggacaacacgctgtccaag
gctaacagggcgagccagtttgacgcggccaagaacctgcatgtggagatgatcagccag
ggcatggagagtgccatcagcagtggcaactggaccatccgccgcttccgcatggagcgc
aaaggggtcacacaggtcctgtcgcgcctgtccttcatcgcggctctagggatgatgact
cgcatcacctcacagttcgagaagactcgcaaggtgagcgggccgcgcgccctgcagccg
agccagtggggcatgctgtgcccggcagacacaccggagggggagagctgcggcctggtc
aaaaacctggcgttgatgacgcatgtgaccacggatgaggaggaggcccccctcgcgcgc
ctggcccacctcctgggcactcagcctgccaccctcgtctccggctttgagtacagctcc
cggggggtggcgatggtgttcctgaacggcagcatcctgggcatccaccggcggcccaag
cggctggtgaaggagttccggcggctgcggcgcgcggggcgcgtgggcgagtttgtgtcc
atcttcctgcagcaggacagcgtctacatcgcgtccgacggcggccgcgtgtgccggccc
ctcatcatctgcgaccgcggcgtcccccgcgtcacctccgctcacaccgcaaagctgaag
agcggggagtggggcttcagcgacttcctgcgcaacggcctggtggagtacctggacgtc
aacgaggagaacaatgcgctcatagccctgtatgagcgcaattgcggtgtggcgacgacg
cacctggagatagagcccttcacggtgctgggcgtggtggcgggcctgatcccctacccg
caccacaaccagtcgccgcgcaacacctaccagtgcgccatgggcaagcaggccatgggc
aacatcgcctacaaccagctcaacgtcatggacaccctgctctacctcctcgtttacccc
cagcggccgctgctgacgacgaagacgatagagctggtgggctttgacaagctgggcgcg
gggcagaacgcgacggtggcggtgatgtcatactcgggttatgacatagaggacgccatc
atcatgaaccgggcgtcgctggaccgcggctttgggcgctgcatcgtgctgcgcaagtat
ggcactgtccttaagaagcaccagaaccgctcccaggacaccgtcgtcgctgcgccgctg
ccccctggccagtcaaagccgacggggcggcacaagctgctggacgaggatggcctggct
gcgccgggggagatcgcgtctccgggggagatcctgatcaacaagcaggtgcccatgtcc
accaaggaccccctgccgcacggcatggtcagcctgccgccctccgcctacaagcctgcg
ccggtatcctggaagggccctcccggcgagtcctgcatcgtggacaaggtgctgctcacc
aacaacgacgacggccacacggtcatcaagacgctgatgaggcatacgcggcggccggag
gttggggacaagttcagcagccggcacgggcagaagggggtggtggggtcgatagtggcg
caggaggacatgcccttcagcgagcgcggcatctgccccgacctcatcatgaacccgcac
ggcttccccagccgcatgaccgtcggcaagatgctggagctcatcggctccaaggccgcc
gtccaatctggccgcttccactacggcaccgcctttggcgagtccaccggccttgccgac
aacgtcgacagcatcagcaagaccctggtggagcacgggttcagctacagcgggaaggac
cagctgaccagcggcagcagcggggagccgctggaggcgctcatctttatgggccccgtg
tactaccagaaactgaagcacatggtgctggacaagatgcacgcacgcgcaagaggaccc
cgagtggtgctcacccgccagcccaccgagggtcggtcgagggatggcggcctgcggctg
ggtgagatggagcgcgactgcctcatcggctacggcgcatccatgctcctgctggagcgc
ctcatgatctcctccgaccagttccaggtgcatgtctgcaaccactgtggcctcctgggg
tactttgatgcgaacgtgggctgcgcagtgtgccccagcacaaagtcttctgacgacatg
tccactctgaagctgccatatgcatgcaagctgctgttccaggagttacagtccatgaac
attgtcccaaggttgaaactggcagaggcctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (102)   
   KEGG ORTHOLOGY (1)   
   RefGene (97)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (118)   

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