KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_53012
Entry
COCSUDRAFT_53012  CDS       T02914                                 
Name
(RefSeq) DEAD-domain-containing protein
  KO
K13179  ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13]
Organism
csl  Coccomyxa subellipsoidea
Brite
KEGG Orthology (KO) [BR:csl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csl03041]
    COCSUDRAFT_53012
   03009 Ribosome biogenesis [BR:csl03009]
    COCSUDRAFT_53012
Spliceosome [BR:csl03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    COCSUDRAFT_53012
Ribosome biogenesis [BR:csl03009]
 Eukaryotic type
  90S particles
   Helicases
    COCSUDRAFT_53012
  Pre-60S particles
    COCSUDRAFT_53012
SSDB
Motif
Pfam: DEAD Helicase_C DUF4217 ResIII AAA_22
Other DBs
NCBI-GeneID: 17042614
NCBI-ProteinID: XP_005649156
JGI: 53012
UniProt: I0Z1U3
AA seq 502 aa
MSASEFSSLDLTEQTQRAIAEMGFTHMTEVQARTIPHLLTGRDVLGAAKTGSGKTLAFLV
PCLELLHKAKFMPRNGTGALIISPTRELAMQIYSVARDLLQHHSQTHGLIMGGANRRTEA
EKLVKGVNLIVATPGRLLDHLQNTKGFVYSNLACLVIDEADRILEIGFEEEMRQIVRILP
KDRQTMLFSATQTTKVEDLARLSFKRQPLYVGVDDKQEAATREGLEQGYCIVPSEQRLLL
LFTFLKKNKDKKVMVFFSSCNSVKYHGELLNYIDVPVKDIHGKQKQQRRTTTFLEFCKAE
KGILLCTDVAARGLDIPAVDWIIQYDPPDDPKEYIHRVGRTARGRSGRGRALLMLLPQEI
GFLKYLKEAKVPLNEYEFPQSKLANVQSQLEKLVEKNFYLHTSARDAYRSYLLAYNSHQL
KSTFNVHTLDLLSVAKSFGFAQPPRVSLNLESKAANVRKAHRTALEGAKGGADYRRKSGH
AFSADNPYGKKTAGDTRQFVRM
NT seq 1509 nt   +upstreamnt  +downstreamnt
atgagtgcctcagagttctcctccctcgacctgacagagcagacgcagcgggccattgct
gaaatgggcttcacgcacatgacagaggtgcaggcacgcaccatcccgcacctcctcacc
ggcagggacgtcctgggggcagctaagacagggtctggcaagacgctggcgttcctggtg
ccctgcttggagctgctacacaaggccaagttcatgccgcgcaacggcacaggcgcgctc
atcatatcccccacgcgcgagctggccatgcagatctacagcgttgcccgagacctcctc
caacaccactcccagacgcacgggctgatcatgggaggcgccaacaggaggacggaggca
gagaagctggtgaagggggtgaacctgatcgtggcaactccggggcggctgctggaccac
ctgcagaacaccaaggggtttgtctacagcaacctggcgtgcctggtcatcgacgaggcc
gaccgcatcctggagattgggtttgaggaggaaatgcgccagattgtgcgcatcctgccc
aaggaccgtcagaccatgctcttctccgccacccagaccaccaaggtggaggatttggcg
cggctgtccttcaagcggcagccgctgtacgtgggggtggatgacaagcaagaggcggcc
acgcgcgagggacttgagcagggctactgcatcgtcccttccgagcagcgcctgctcctg
ctcttcaccttcctcaaaaagaacaaggacaagaaggtcatggtgttcttctcgtcgtgc
aactcagtcaagtaccatggcgagctgctcaactacattgacgtcccagtcaaggacatc
catggcaagcagaagcagcaacgccgcaccaccaccttccttgagttctgcaaggcagag
aagggcattctgctgtgcacagacgtggcggcgagggggctggacattcctgcagtggac
tggatcatccagtacgatccacccgacgatcccaaggagtacatccaccgggtggggcgc
accgcgcgtggccggtccggccgcggccgcgcgctgctcatgctgctgccccaggagatc
ggcttcctcaaatacctcaaggaggccaaggtgcccttgaacgagtacgagttcccacag
agcaagctggccaacgtgcagagccagctggagaagctggtggagaagaatttctacctg
cacacgagtgcgcgcgacgcctaccgctcctacctgctcgcctacaactctcaccagctc
aagtccaccttcaacgtccacacgctcgacctcctctctgtggccaagtcctttggcttc
gcgcagccgccacgggtcagcttgaacctggagagcaaggctgccaatgtgaggaaggct
cacaggacagcattggagggagctaagggaggtgcagactaccgacgaaagtctgggcat
gccttctctgccgataacccatacggcaagaagactgctggtgacacccggcaatttgtg
cgcatgtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (123)   
   KEGG ORTHOLOGY (1)   
   RefGene (118)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (136)   

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