KEGG   Clostridium saccharoperbutylacetonicum: Cspa_c29480
Entry
Cspa_c29480       CDS       T02467                                 
Symbol
rep
Name
(GenBank) ATP-dependent DNA helicase Rep
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
csr  Clostridium saccharoperbutylacetonicum
Pathway
csr03420  Nucleotide excision repair
csr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Cspa_c29480 (rep)
   03430 Mismatch repair
    Cspa_c29480 (rep)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csr03400]
    Cspa_c29480 (rep)
Enzymes [BR:csr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Cspa_c29480 (rep)
DNA repair and recombination proteins [BR:csr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cspa_c29480 (rep)
   MMR (mismatch excision repair)
    Other MMR factors
     Cspa_c29480 (rep)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 PcrA_UvrD_tudor PhoH AAA_11 DEAD
Other DBs
NCBI-ProteinID: AGF56709
UniProt: M1MFL6
Position
3215547..3217793
AA seq 748 aa
MHYEKDLERLNEYQREAVLDESDACVVNANVGSGKTTILISKIIYLHYAKNISYKDMIVL
TFTNKAANEIRERLLVSDSTIKPEELEGFGTFHSVALNLLKNKFSIEEMGYTKDFLVIEP
EEELDIALQIIQEEKLKIKYKNRLKKRLEKAMSIEEEEEKTSPYDDDIFKLANLLKEEKI
KQNKMSFLDILKNATTLLEDNKLSSKWIIIDEVQDSDKIQLDFIDKLKGENTKLFAVGDP
NQVIYTWRGSSLNVVYTLKHKYNAKELSLPINYRSNSFILSAARYFQQSGNELIGAREAG
NKIKVKKQYNSFNEACYLADKIKEIHKSGVSYKEIAVFYRLQEQSQAFEDVFFKNDIPYE
VSLKKTIRDIPVLNWVIKLFRFCVNNNDFTSGVYVLSDKEYGERMTEKTAKIIVKEQNTI
RSELLFKMHEFINTCSEPKDSEQLYNYFEFDKYIKPTSSTYTEDKESICTLINIIIEYVK
EKHMPFISGLKDFINSSALYGVNILKKDINNEADSVKLMTLHASKGLEFSYVFITGVNYG
LIPLQTRDFEEEEEMRLFFVGITRAKDYLELSYYTNPDYKKVAPGESRYIRMIPEKLIEN
DEVKNESVNLQELKKQIIEARKIIKNNDAEIEKSRVSEENKEEIIALKKQKEEKLFTEGQ
REDNILISENEEPLMDVKVNREVYLTDKVNEEESVVNEIVRDASSKQVTHKKYGTGKVLK
EDEMMIEVEFENYGIKEFIKAFSEFDFL
NT seq 2247 nt   +upstreamnt  +downstreamnt
atgcattatgaaaaagatttagaaagattaaatgaataccaaagagaagcagtccttgat
gaaagtgatgcatgtgttgtaaatgctaatgttggaagtggaaaaacaacaatcttaatt
tcaaagattatataccttcactatgcaaaaaatattagttacaaagatatgatagtgcta
acttttactaataaagcagcaaatgaaattagagaaaggttactggtttctgatagtact
ataaagcctgaagagttagagggatttggaacttttcatagtgttgctcttaatttgctt
aaaaataaattttcaattgaagaaatgggatatacaaaggattttctagtaatagagcct
gaggaagagttagatattgctctgcagataatacaggaagaaaagcttaaaattaaatat
aaaaatagattaaaaaagcgattagaaaaggctatgtctattgaagaggaagaagaaaag
acttcgccttatgatgatgatatatttaagttggccaacttgttaaaagaagaaaagata
aaacaaaacaagatgtcctttttagatatattgaaaaatgccactactttattagaagat
aataagctttcatcaaagtggattataatagatgaagtgcaagatagtgataaaatccag
cttgattttatagataaactaaaaggtgaaaatacaaaattatttgcagtaggtgatcca
aatcaagttatttatacttggagagggagctccttaaatgtggtttacactttaaagcat
aaatataatgcaaaagagttatcacttccaataaattatcgctccaacagttttatttta
agtgcagcaagatattttcagcaaagtggaaatgaattaataggagccagagaagctgga
aataagataaaagtgaaaaagcaatacaattcctttaatgaagcatgttatcttgcagat
aaaatcaaggaaatacataaatcgggtgtttcatataaggaaatagcagttttttataga
ttacaggaacaatcgcaagctttcgaagacgtattctttaaaaatgatattccatatgaa
gtatctttaaagaaaactatacgagatattccagtcttaaattgggtgattaaattattt
agattttgtgtaaataataatgattttacatcaggagtttatgttcttagtgataaagag
tatggtgaaagaatgacagaaaaaactgctaagataatagttaaagaacagaatacaata
aggtcagagttactttttaaaatgcatgaattcattaatacctgttctgaacctaaagat
tcagaacagctttataattattttgaatttgataaatatataaaaccaacatcatctact
tatactgaagataaagaatcaatttgcacacttataaatattattatagagtatgttaag
gaaaaacatatgccatttatatctggtcttaaagattttataaattcttctgcattatat
ggcgtgaatatcttaaaaaaggatataaataatgaagcagattcggttaaattaatgacg
ctacatgcttcgaaggggttagaattttcttatgtgtttattacaggggtaaattatgga
ctaattccactacagactagagattttgaggaagaagaggaaatgagattgttttttgtt
gggattacaagagcaaaagattatctagaactttcttattatacaaatccagattacaaa
aaagtagcacctggagaaagcagatatattcgtatgattccagaaaagcttatagaaaat
gatgaagttaaaaatgaaagtgtaaatttacaagaacttaagaaacagattatagaggca
agaaaaattattaagaataatgatgctgaaattgaaaaaagcagagtgagtgaagaaaat
aaggaagaaataatagctttaaaaaaacaaaaagaagaaaaactatttactgaaggccag
cgagaagataatatacttatttcagaaaatgaagagccattgatggatgttaaagtaaat
agagaggtatatttaacagataaagttaatgaagaggaatctgtggttaatgaaatagta
agagatgcgtcatctaaacaggtgactcacaaaaaatatggaacaggaaaagttttaaaa
gaagatgaaatgatgatagaagtagagtttgaaaattatggaattaaggaatttataaaa
gcttttagtgaattcgactttctatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (72)   
   KEGG ORTHOLOGY (1)   
   RefGene (69)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (89)   

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