KEGG   Cucumis sativus (cucumber): 101204443
Entry
101204443         CDS       T02486                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03082  ATP-dependent chromatin remodeling
csv03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    101204443
   03083 Polycomb repressive complex
    101204443
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:csv03036]
    101204443
Enzymes [BR:csv01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     101204443
Chromosome and associated proteins [BR:csv03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     101204443
   HDAC complexes
    Sin3A-HDAC complex
     101204443
    BRAF-HDAC complex
     101204443
    REST complex
     101204443
    SHIP complex
     101204443
    MiDAC complex
     101204443
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     101204443
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    101204443
  Chromatin remodeling factors
   NuRD complex
    101204443
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 101204443
NCBI-ProteinID: XP_004138094
UniProt: A0A0A0LS04
Position
1:677802..680836
AA seq 465 aa
MSDDIHGGASLPSGPDGRKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHR
RMEINRPYPAGPEDIRRFHSDDYVDFLASVSPETLSDHAFSRHLKRFNVGEDCPVFDGLF
GFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYH
KRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGVGTGKNYALNVP
LNDGMDDDSFRGLFRPLIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF
LRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYALHIEP
SNMENLNSPKDMEKIRNTLLEQLSRLPHAPSVPFQMTPSSEIPEEVEESIERRPKRRIWN
GEDYDSDSEENRKRPNISEGTGVNNLTRDVVDDMEEDKNMGHQCC
NT seq 1398 nt   +upstreamnt  +downstreamnt
atgtccgacgacattcacggcggtgcttcacttccatcaggtcccgatggtcggaaacgc
cgtgtgacctacttctacgagcccacaattggcgattactattacggccaaggccatccg
atgaaacctcaccgtatccgcatggcccataatctcatcgttcactacggtcttcaccgt
cggatggagatcaaccggccctaccctgctggtcctgaggatatccggaggtttcactcc
gatgactatgtcgatttcctcgcctccgtcagccccgaaacgctgtcggatcacgctttc
tctcgccatctcaagcgctttaatgttggcgaggactgccctgtttttgatggcttattt
ggcttctgccaagcgtctgctggcggctccattggtgctgccgtcaagctcaatcgcggc
gatgctgatattgctatcaattgggctggtggccttcatcatgctaagaagtctgaggcc
tccggtttctgttacgtcaatgatattgttttgggtattcttgagctgctgaagtatcac
aagcgtgtactatatattgacattgatgtccatcatggtgatggcgtggaggaggcattt
tacactactgacagagtaatgacggtttcttttcataaatttggggatttctttccaggg
actgggcacattaaggatgttggagtagggactggtaaaaactatgcccttaatgtcccc
ttaaacgatggaatggatgatgacagttttcgtggtctgtttaggccacttattcaaaaa
gttatggaggtgtatcagccagatgcagtagtactccagtgtggagctgattcattatct
ggtgataggttggggtgcttcaacctatctgtaaagggccatgcagattgtcttcgtttc
ttgagatcatttaatgttcctttaatggtattaggtggaggaggatacacaatccgcaat
gttgctcgctgctggtgttacgagacagcagttgctgttggagttgaaccagacaataaa
ttgccttacaacgagtattttgagtattttggacctgattacgcgcttcacatagaacca
tcgaacatggagaatctaaattcacctaaagatatggaaaagataaggaacaccctgcta
gagcaactctctagactcccacatgcacccagtgtacctttccagatgactccctcgtct
gaaattccggaagaggttgaagagagcattgaacgtagacccaaacgccgtatctggaac
ggtgaggattatgattctgattctgaagaaaaccgaaagcgaccaaacattagtgaagga
actggtgtaaataatctgacaagggacgtagtagatgacatggaggaggataaaaacatg
ggccatcaatgttgttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (28)   

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