KEGG   Cucumis sativus (cucumber): 101219875
Entry
101219875         CDS       T02486                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
  KO
K18655  ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03013  Nucleocytoplasmic transport
csv03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    101219875
   03015 mRNA surveillance pathway
    101219875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csv03019]
    101219875
Enzymes [BR:csv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     101219875
Messenger RNA biogenesis [BR:csv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     101219875
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 AnfO_nitrog DUF5886
Other DBs
NCBI-GeneID: 101219875
NCBI-ProteinID: XP_004137993
UniProt: A0A0A0LDT3
Position
3:30283347..30286585
AA seq 508 aa
MVDDAAPGSTTNDSYCDATITHSPTTAPFVVSPLPKRGWGDEEHHDVVADTGDLSSVPSE
VMESLKIEDETTLEEPIDSNITAVTTGDTPYSSASTFEDLNLSKELLKGLYVEMRFHKPS
KIQAISLPMILTPPYKHLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAM
QNIEVLKKMGKYTGITSECAVPADSANYMPVSKRPPTTAQVVIGTPGTIKKWMSGRKLGV
SCVKILVFDEADHMLGEDGFQDDSLRIMRDIERSSSHFQVLLFSATFDENVKNFVSRVVK
DYNQLFVKKEELSLESVKQFKLICPNEQTKIRVIKDRIFELADKLGQTIIFVGTRKSAGV
LHKALVDLGYDVTTIKGAMTNDIRDKIIKEFKDGLTKVLISTDLLARGFDQQQVNLVINY
DLPLKHDPSSQAMKYRSSSSSEPNFEVYLHRIGRAGRFGRKGAVFNLLCGDQEIKRMDKI
QKHFGSEVIEVRDTDEDIEAALKSAGLI
NT seq 1527 nt   +upstreamnt  +downstreamnt
atggtagatgatgcggctccaggttctaccaccaatgactcgtactgtgacgccaccatc
actcattccccgactactgccccattcgtagtttcaccattgccaaaacgaggttggggc
gatgaagaacaccatgatgtggttgctgatactggagatttatcctctgtgccgtccgag
gtcatggaatcccttaaaattgaagacgaaacaacgcttgaagaacccatagactctaac
atcacagctgtgacaactggtgatactccatattcatcggctagtacttttgaggatttg
aatctgtctaaggagttgttgaagggtttgtatgttgagatgagattccataagccaagt
aaaattcaagctataagtttgcctatgatcctgactcctccttacaaacatttaattgct
caagcacacaatggttctggaaagactacatgttttgtgcttgggatgttgagtcgtgtt
gatgtgaacttaaaggctcctcaggcattttgcatatgtcctacaagggagttagcaatg
caaaatattgaggttcttaagaaaatgggaaaatacaccgggataacttcagagtgtgct
gttcccgctgacagtgcaaactatatgccagtatcaaagcggccacccacaactgcacaa
gttgtgattggaactcctggcacaataaagaaatggatgtcagggaggaagttgggagta
agttgcgtgaagattcttgtttttgatgaggctgatcatatgcttggcgaggatggcttt
caggatgattcattgagaatcatgagggacattgagagaagtagctctcatttccaggtg
cttctgttctctgctacattcgatgagaatgttaaaaactttgtctctagggtggttaaa
gactacaaccaactgtttgtgaagaaggaagaactatctttggagagtgtgaagcaattc
aagttgatatgtccaaatgaacaaactaaaattcgagtcataaaagatagaatttttgaa
ctagcagacaaattgggtcaaacaattatatttgtgggcacaagaaagagtgctggagtg
ttacacaaggcactagttgatcttggttatgatgtgactaccatcaaaggggcaatgacc
aatgacattagagacaaaataataaaagagttcaaggatggtttgacaaaagttcttatt
tcaactgaccttctagctcgaggctttgatcagcagcaagtcaatctagttatcaattat
gatcttcctcttaaacacgatccttcttcacaagcaatgaaatacagatcttcctcatca
tcagagcctaacttcgaggtgtacctccatcgaattggtcgggcaggtcgttttgggcgc
aagggagctgtgtttaacttgctctgtggcgatcaggaaatcaagcgaatggacaaaatt
cagaagcattttggctctgaagtaatagaggttagagacactgatgaggacattgaagca
gccttaaaatctgctggattgatttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (30)   

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