KEGG   Cucumis sativus (cucumber): 101222100
Entry
101222100         CDS       T02486                                 
Name
(RefSeq) transportin-1
  KO
K18752  transportin-1
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    101222100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csv03019]
    101222100
   03009 Ribosome biogenesis [BR:csv03009]
    101222100
Messenger RNA biogenesis [BR:csv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     101222100
Ribosome biogenesis [BR:csv03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    101222100
  Pre-60S particles
    101222100
SSDB
Motif
Pfam: HEAT_EZ HEAT HEAT_2 IBN_N CEP104-like_TOG Maestro_HEAT PDS5 CLASP_N DUF3437 Dopey_N Usg
Other DBs
NCBI-GeneID: 101222100
NCBI-ProteinID: XP_004147054
Position
2:13457052..13473465
AA seq 891 aa
MAASASWHPQENGFNEICGLLEQQISPTSNPDKSQIWQQLQQYSQFPDFNNYLAFILARA
EGKSVEVRQAAGLLLKNNLRTAYKSMTPVFQQYIKSELLPCMGAADRHIRSTVGTIISVI
VQLGGILGWPELLQALVRCLDSKDQNHMEGAMDALSKICEDIPQVLDSDVPGLSERPINV
FLPRLFQFFQSPHATLRKLSLSSVNQYIMLMPTALYISMDQYLQGLFVLANDSTSEVRKL
VCQAFVQLIEVRPTFLEPHLRNVIEYMLQVNKDADEEVSLEACEFWSAYCDAQLPPENLR
EFLPRLIPALLSNMVYADDDESLLEAEEDGSLPDREQDLKPRFHSSRLHGSENAEDDDDD
IVNIWNLRKCSAAALDILSNVFGDDILPMLMPVVEANLSANGDEAWKEREAAVLALGAIA
EGCITGLYPHLPEIVKFLIPLLDDRFPLIRSISCWTLSRFSKFIVQGIGTQKGYEQFDKV
LMGLLRRLLDNNKRVQEAACSAFATLEEEAAEELAPHLKNILQHLICAFGKYQRRNLRIV
YDAIGTLADAVGGELNQPVYLDILMPPLIAKWQQLSNSDKDLFPLLECFTSIAQALGTGF
TQFAPPVYQRCINIIQTQQMAKVEPVSAGVQYDREFIVCCLDLLSGLAEGLGSGIESLVS
QSNLRDLLLQCCMDEASDVRQSAFALLGDLGRVCHVHLQPRLSEFLTAAAKQLDTPKLKE
IVSVANNACWAIGELAVKVRQEISPVVMTVISSLVPILQHAQELNKSLVENSAITLGRIA
WVCPQLVSPHMEHFIQPWCTALSMIRDDVEKEDAFRGLCALVKSNPSGAVTSLPYMCKAI
ASWHEIRSQDLHNEVCQVLHGYKQMLRNGGWDQCISSLEPSVKDKLSKYQV
NT seq 2676 nt   +upstreamnt  +downstreamnt
atggcggcgagtgcatcttggcatcctcaggaaaatgggttcaacgagatctgtggcttg
ctggagcagcaaatttctcctacttcgaatccggataagtcccagatttggcagcaactt
cagcaatactctcagttccctgacttcaataattatcttgcgtttattcttgcacgagct
gagggtaaatcagttgaggttcgacaagctgctggcttacttttgaaaaacaaccttaga
actgcatacaagtcaatgactcctgtctttcagcaatatattaaatccgaattgttgcca
tgtatgggagctgcagacagacatattaggtctacagtcgggaccatcatcagtgtcatt
gttcaactagggggaatattggggtggcctgagttgttgcaagcacttgtaagatgctta
gacagtaaagaccaaaatcacatggaaggtgctatggatgctttgtccaagatttgtgaa
gatatacctcaagtgcttgactctgatgtacctggattgtctgaacgcccaatcaacgta
tttcttcctagattatttcagttcttccagtctccacatgctacattgagaaaactctcc
ttgagttctgtgaatcagtacattatgctgatgcccactgcgctttacatatccatggac
cagtatcttcaaggtttatttgttcttgcaaatgactctacgtcagaagtgcgaaagttg
gtttgccaagcatttgtgcagctaattgaagtacgcccaactttcttggagccacatctg
cggaatgtaatcgaatacatgttgcaagttaataaggatgctgatgaggaagtttcgctt
gaagcctgtgaattttggtctgcatattgtgatgcccaattacctcctgagaacttaaga
gagttcttgccacgtttaattccagcattattgtcaaatatggtctatgctgatgacgat
gaatcacttcttgaggctgaggaagatggatctcttccagaccgagagcaggatctaaaa
ccccgtttccattcatcaaggttacatgggtcggagaatgcagaagatgatgatgatgac
attgtaaatatatggaacttgcgcaaatgcagtgctgcagctcttgatattctctcaaat
gtgtttggggatgacattcttcctatgttgatgcctgttgtcgaggccaatttgtccgct
aatggtgatgaagcctggaaagaaagagaagctgctgtactggctcttggtgcgatagct
gaaggttgcattactggactttatcctcatctgcctgagattgttaaatttctcattcct
cttttagatgatagatttcctctaataaggagtatatcttgttggacactttctcgtttc
agcaagttcattgtgcagggcattggaactcagaaaggttacgaacaatttgataaagtt
ctcatgggacttctacgaagattattagacaataacaagagggtgcaagaagctgcttgt
tctgcttttgcaacgctggaggaggaagctgccgaggaattagcaccccatttgaaaaat
atattacagcacctaatatgtgctttcggaaaatatcagagacggaatctacggatagtg
tatgatgctattggaaccttagcagatgctgtaggaggggagctaaatcagcctgtttat
cttgatattctcatgccaccattaattgccaaatggcagcaactttctaactcagacaaa
gatcttttccccctgttggagtgcttcacatctatagcacaggctttggggactggattt
acccaatttgctccgcctgtgtatcagagatgcataaacatcatccagacccaacaaatg
gcaaaggttgagcctgtttctgctggggttcagtatgatagagagttcattgtgtgctgt
cttgatcttctttcaggactcgcagaaggtcttggcagtggaattgaaagtttggtttct
caaagcaatttgagggacttgctcttgcaatgctgcatggatgaagcttctgatgtccga
cagagtgcctttgcattgcttggggatcttggaagagtatgccacgtccatttgcaaccg
cgtttatcagaatttcttaccgctgcagcaaagcaactggatactcctaagctgaaggaa
attgtttctgtggcaaacaatgcctgctgggcaattggagaattagctgttaaggtacgc
caagaaatttctcctgtcgttatgacagtgatttcaagcttggtcccgattcttcaacat
gcacaggagctaaataaatctctggtagaaaacagtgcaattacacttggaaggatcgca
tgggtttgccctcagctagtgtcaccacatatggaacatttcatccaaccatggtgcact
gctttatccatgatacgtgatgatgtagaaaaggaggatgcttttcgaggtctttgcgct
ctggttaaatcaaatccttcaggggcagtaacttcacttccttatatgtgcaaagctatt
gccagttggcatgaaataagaagtcaagatcttcataatgaagtatgccaggttctacac
ggttataagcagatgctgagaaatggtgggtgggaccagtgtatttcgtctctggaacca
tccgtgaaggacaaactatcaaaatatcaagtatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (11)   
   Pfam (11)   
All databases (45)   

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