KEGG   Cronobacter sakazakii Sp291: CSSP291_17110
Entry
CSSP291_17110     CDS       T02461                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
csz  Cronobacter sakazakii Sp291
Pathway
csz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:csz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CSSP291_17110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csz03021]
    CSSP291_17110
   03400 DNA repair and recombination proteins [BR:csz03400]
    CSSP291_17110
Enzymes [BR:csz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CSSP291_17110
Transcription machinery [BR:csz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CSSP291_17110
DNA repair and recombination proteins [BR:csz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CSSP291_17110
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: AGE87991
Position
complement(3631769..3635992)
AA seq 1407 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERSQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKINAKGEGMVLTGPKEAERLYRSG
QAELHARVKVRITEYEKDANGEFVSKTSLIDTTVGRAILWMIVPKGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRNGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVARNTLLNEQWCDILEANSVDSVKVRSVVTCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVAGYIRFTDMIDGQTITRQTDELTGLSSLVVLDSSERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEVAGIVSFGKETKGKRRLVITPVDGGDAYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVQAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIMDAGSSEFLEGEQVEYSRVKIANRELEANGKVSATYMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGNDNE
NT seq 4224 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcgtcgccagacatgatccgttcctggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtaccttcaaaccggagcgcgatggtctgttctgcgcccgt
atctttgggccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgtgatttgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgag
cgcatgggccacatcgaactggcttccccgaccgcgcacatctggttcctgaaatcactg
ccgtcccgtatcggtctgctgctggatatgccgctgcgcgatatcgaacgtgtactgtat
tttgaatcttacgtggttatcgagggtggcatgaccaacctcgagcgcagccagatcctg
actgaagagcagtacctggacgcgctggaagagttcggtgacgagttcgacgcgaaaatg
ggcgccgaagctattcaggctctgctgaaaagcatggacctggaagccgagtgcgagcag
ctgcgtgaagagttgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgc
atcaagctgctggaagccttcgtacagtctggcaacaagccggagtggatgatcctgacc
gtgctgccagtgctgccgccggatctgcgtccgctggttccgctggatggcggtcgtttc
gcaacgtcggatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggcggcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtagacgccctgctggataacggccgtcgcggtcgtgcgatcaccggctccaac
aagcgtccgctgaaatcactggcagacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgcgtggactactctggtcgttccgtaattaccgtaggtccgtac
ctgcgtctgcaccagtgcggcctgccgaagaaaatggcgctggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgcgaccaccatcaaagccgccaagaaaatg
gttgagcgcgaagaagcggtcgtttgggatatcctggacgaagttatccgtgagcacccg
gtactgctgaaccgtgcgccgaccctgcaccgtctgggtattcaggcgttcgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctagaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgcgacaagattaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagcggaacgtctgtaccgctcaggc
caggctgaactgcacgctcgcgtaaaagttcgtatcactgaatacgaaaaagacgcgaac
ggcgagttcgtctccaaaaccagcctgatcgacaccacggttggccgtgccatcctgtgg
atgatcgtaccgaaaggtctgccgttctctatcgtgaaccagccgctcggtaaaaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgttattttt
gctgaccagaccatgtataccggttttgcgtatgcagcacgttctggtgcgtccgttggt
atcgacgatatggttatcccggcgaaaaaagccgagatcatcgccgaagccgaagcggaa
gtggccgagatccaggagcagttccagtctggcctggttaccgcgggcgaacgctataac
aaagtcatcgatatctgggccgcggcgaacgatcgcgtatccaaggcgatgatggacaac
ctgcagaccgaaaccgttatcaaccgtaacggcgaagaagagcagcaggtttcctttaat
agcatctatatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcgggtatgcgtggtctgatggcgaagccggatggctccattatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcgacccacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgactcgtcgtctg
gttgacgtcgcgcaggatctggttgtgaccgaagacgattgcggcacgctggaaggcatc
accatgaccccggttatcgagggtggcgatgttaaagagccgctgcgcgatcgcgttctg
ggccgtgtaacggcagaagacgtgctgaagcctggcacggcggatatcctggttgcgcgc
aacacgctcctcaacgagcagtggtgtgacatcctggaagctaactccgtagacagcgtt
aaagttcgctccgtagtaacctgtgacaccgacttcggcgtctgtgcgcactgctatggt
cgtgacctcgcgcgtggccacatcatcaacaaaggtgaggccatcggcgttatcgcagca
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgcctg
agcaacgcgaagtcggttgttaactccagcggtaagctggttgttacttcccgtaacacc
gagctgaaactgatcgacgaattcggccgtactaaagaaagctataaagtgccttacggt
gctgttatggcgaaaggtgacggcgagcaggtcgctggcggcgaaaccgtcgcgaactgg
gatccgcataccatgccggttatcaccgaagtggcgggttacattcgtttcaccgacatg
atcgacggccagaccattactcgtcagactgacgagctgaccggtctgtcttcgctggtg
gttctggattcttcagaacgtactgcgggcggtaaagatctgcgtccggcgctgaaaatc
gttgacgctaacggtaacgacgttctgatcccgggcaccgacatgccggctcagtacttc
ctgccaggtaaagcgattgttcagctggaagatggcgttcagatcagttccggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggacatcaccggtggtctgccgcgc
gttgcggatctgttcgaagcgcgtcgtccgaaagagccggcaatccttgctgaagtggcg
ggtatcgtctccttcggtaaagaaaccaaaggcaaacgtcgtctggttatcaccccggtt
gacggcggtgacgcatacgaagagatgatcccgaaatggcgtcagctcaacgtgttcgaa
ggcgaacgtgtggaacgtggtgacgtcatctccgatggtccggaagcgccgcatgacatt
ctgcgtctgcgtggcgttcaggcggtgacccgttacatcgttaacgaagtgcaggacgtt
taccgtctgcagggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcatggacgcgggcagctccgagttcctggaaggtgagcaggtt
gaatactctcgcgtcaagatcgctaaccgcgaactggaagcgaacggcaaagtcagcgcg
acttacatgcgcgacctgctgggtatcaccaaagcgtctctggctaccgagtccttcatc
tccgcggcatcgttccaggagaccactcgcgtgctcaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttacgcgtaccaccaggatcgtatgcgccgtcgcgctgcgggtgaactcccggca
gcaccgcaggtaactgcggaagacgcgtctgcaagcctggcagaactgctgaacgcaggt
ctgggcggcaacgacaacgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system