KEGG   Clostridium taeniosporum: BGI42_14105
Entry
BGI42_14105       CDS       T04957                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
ctae  Clostridium taeniosporum
Pathway
ctae03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ctae00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BGI42_14105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ctae03019]
    BGI42_14105
   03009 Ribosome biogenesis [BR:ctae03009]
    BGI42_14105
Enzymes [BR:ctae01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BGI42_14105
Messenger RNA biogenesis [BR:ctae03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BGI42_14105
Ribosome biogenesis [BR:ctae03009]
 Prokaryotic type
  rRNA helicases
   BGI42_14105
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 SNF2-rel_dom
Other DBs
NCBI-ProteinID: AOR24795
UniProt: A0A1D7XN71
Position
3162089..3163666
AA seq 525 aa
MNDNKFYSLGLKDTIVKAIEDLGFKSPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGC
PILSRLNDTNGIKALILAPTRELAVQVNEEFKKLSKYEKINVLPVYGGESIDRQIKALRR
DNIDIVVGTPGRVLDLTKRKILKLDKIEFLVLDEADEMLNMGFIDDIETIISNTPEERQT
LLFSATMPGPIAKLAKNYMKPDAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDL
DNPSSAIIFCRTKRGVDELVQELQAKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIAT
DVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVTPKEMSMLKQIQR
VTKSTIKEKPVPTAKEIHNRKFNNIVNEIRETIDGGDFEKFIPSAIELNEAYDPVSIIAS
LMKIKFESESIFEYNTDSLDAPSAKSDVRLFFSVGKRDGLTPKILINYIKDKSRIRPAAI
GKIDLMDNFSFVTIDSDVSSKVLDKCIGGKINRKKVNVEIANKRK
NT seq 1578 nt   +upstreamnt  +downstreamnt
atgaacgataacaaattttattctttaggtcttaaagacacaattgtaaaagcaatcgaa
gatttaggatttaaaagcccttctcaaatccaagaagaaagcatacctgtaacgttagaa
ggttttgacttaattggtcaagcacaaactggtacaggaaaaactgctgcgtatggttgt
cctatacttagcagattaaatgatacgaacggaattaaagcacttattttagctccaaca
agagagcttgctgtacaagtaaatgaagagtttaaaaaactttcaaaatatgaaaaaata
aatgtattacctgtttatggtggggaatctatagatagacaaattaaagcattaagaaga
gataatattgatattgttgttggaactcctggaagagttctagatcttacaaaaagaaaa
atacttaaattagataagatagaattcttagtattagatgaagctgatgaaatgcttaat
atgggattcattgatgatattgaaactataataagtaatacaccagaagaaagacaaact
ttattattttctgctacaatgcctggtccaatagctaaattagctaaaaattatatgaaa
ccagatgcaaaacacgttgcaataaaaagaagttctcttacagtttctaaaatagaacaa
aattattttatgattaataacaaacatagacttgaagcactttgtagattattagattta
gataacccttcttctgctataatcttctgtagaactaaaagaggtgttgatgagttagtt
caagaacttcaagctaaaggttatgtagttgagggtatgcatggtgatatgtctcaagtt
cacagattaactactttaaagaaatttaaagaaggttcattgaatttacttatagcaact
gatgtagctgctagaggtatagatgttgatggtattacccatgtaataaattatgattta
ccacaagacgtagaatcatacgttcatagaatcggaagaactggtagagcaaatagaact
ggtacagcttattctttagtaactccaaaggaaatgagtatgcttaaacaaattcaaaga
gtaactaagagtacaataaaagaaaaacctgttccaaccgctaaagaaatacataataga
aaatttaataatattgttaatgaaattagagaaactattgatggtggagattttgaaaaa
ttcattccaagtgctatagaactaaatgaagcttatgatcctgtttctataatagcatct
ttaatgaaaataaaatttgaaagtgaaagcatatttgaatataatactgatagcttagat
gcaccaagtgcaaaaagtgatgtacgtttattcttctctgttggaaaaagagatggctta
actccaaaaatattaataaattatattaaagataagagcagaataagacctgctgctata
ggtaagatagatcttatggataacttctcatttgtaactatagattcagatgtttcttct
aaagttttagataaatgtatcggtggaaaaattaatagaaaaaaagttaatgttgaaata
gctaataaaagaaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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