KEGG   Chlamydia trachomatis RC-J/943: CTRC943_00760
Entry
CTRC943_00760     CDS       T02766                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ctcj  Chlamydia trachomatis RC-J/943
Pathway
ctcj03030  DNA replication
ctcj03410  Base excision repair
ctcj03420  Nucleotide excision repair
ctcj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ctcj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CTRC943_00760 (ligA)
   03410 Base excision repair
    CTRC943_00760 (ligA)
   03420 Nucleotide excision repair
    CTRC943_00760 (ligA)
   03430 Mismatch repair
    CTRC943_00760 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ctcj03032]
    CTRC943_00760 (ligA)
   03400 DNA repair and recombination proteins [BR:ctcj03400]
    CTRC943_00760 (ligA)
Enzymes [BR:ctcj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CTRC943_00760 (ligA)
DNA replication proteins [BR:ctcj03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CTRC943_00760 (ligA)
DNA repair and recombination proteins [BR:ctcj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CTRC943_00760 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CTRC943_00760 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CTRC943_00760 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CTRC943_00760 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT HHH HHH_3 DNA_ligase_ZBD PTCB-BRCT Transposase_20 BRCT_2 RlmA_N
Other DBs
NCBI-ProteinID: AGR96365
Position
163780..165771
AA seq 663 aa
MGAVSRDDYIALCTELVEHDRRYYALNQPTISDYSYDMKMRELQEIEVQHPEWKVSWSPT
MYLGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLGYSPGYSLELKIDGIAV
AIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEAFE
ELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGLITDQKKRSHFENLQL
CSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLGLTSK
HYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQDEIE
KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVCHEPVVKEKVSVRCI
NPLCSGGMLEKICFFASKSALNIDHLGEKVVTKLFEVGLISSCSDIFALTEEDLKQVPGF
KDRSIQNLLASIAGAKKVALDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMS
IEGIGPKVAASIVAFFSKHENREEIRRMQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQM
TRTQAEERIRSLGGKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESKLSRILDAK
SVS
NT seq 1992 nt   +upstreamnt  +downstreamnt
atgggtgctgtatctcgagatgattatattgctttatgcacagaattagtggaacatgac
cgacgctattatgcgctcaatcaaccgacgatttctgattacagctatgatatgaaaatg
cgagagcttcaagaaatagaagttcagcatccggaatggaaggtttcatggtctcctacc
atgtatttgggggatcgtccttcaggacagtttcctgtggttcctcattctagccccatg
ttgtctatagcgaatgtatactcattgcaagagctagaggaatttttttcccgtacagaa
aaattattggggtactctcctggatattctttagaactcaaaattgatggaattgctgtc
gccattcggtacgagaagcgattgtttgctcaagctttgagtcgggggaatggggtaaaa
ggagaagatattacagctaatgtcagtactatacgctctttacctatgagactccctcaa
gaggctcccgaggatctagaagtgcgaggagaagtgtttctttcatatgaagcgtttgaa
gagctcaatgcttgtcaacgggaacaagggaaactggaatttgctaatcctcgtaatgca
gctggaggaactcttaagcttttatcttctaaggaagctgctaagcgtaaattagacttg
tctgtttatgggttgatcacagatcaaaaaaaacgctcacattttgaaaatcttcagtta
tgctctcaatggggatttttcgttgcagggatgccgaaacaatgccgttcgagacaagag
gtggtagaacgtattcgagagatagaggagatgcgcgcagcgctcccgatggctatcgat
ggagtcgtcattaaagtagacaatattgcacaccaggatcggctaggtttgacgagcaaa
cattatcgttgggcgatagcttataaatatgctccggaaagagcagaaacgattttggag
gatattgtcgttcaagtagggaaaacgggtattcttactccggttgccgagttagctcct
gtttttttatctgggagccgcgtgtccagagcatccttatacaaccaggatgagattgaa
aaaaaagatattcgcatcggagattcggtgtatgtcgaaaaaggaggagaggttattccc
aaaattgttgggattaatttggctaagcgttcattagagagcgagccttggaaaatgcca
agcctgtgtcctgtatgtcatgaacctgttgttaaagagaaggtgtcggtgcgttgtatc
aatccactttgttcaggggggatgctagaaaagatctgtttctttgcaagtaagagcgct
ttaaacatagatcatttgggagagaaggtcgtaactaaattattcgaagtaggtctcatt
agttcttgttcggatatatttgctcttacagaagaagatttgaaacaggtccctgggttt
aaagatcgttctatacagaatttattggcaagcattgccggagccaaaaaggtggcatta
gatcggcttttaacggctctttctattccttttgtggggagctctggtgccatagctctg
gcagaccactttggaactctggacaaagtaatcgaagcttctttagatgagctgatgtct
atagaggggattggtcctaaggtagctgcatcgatcgtcgcgttcttctcgaaacatgag
aatagagaggaaattcgtcggatgcaagagctaggagttcaggttctttctaagcaatcc
gataaagaggctcctttacaaggaaaagtgtttgttcttacggggactctccaacagatg
acgagaacgcaagcagaggagcgtatccgctccctaggggggaaagtgagctcttcggta
tcgaagagcacatatgccgtcatagcgggtagcgaagctgggggtaaattgaaaaaagct
caagatttaggtttaagtatttggaacgagagcaaattatcaagaattcttgacgcaaaa
tcggtctcctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (31)   

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