KEGG T00088: CT0055

Chlorobaculum tepidum: CT0055

Entry

CT0055            CDS       T00088

Symbol

topA

Name

(RefSeq) DNA topoisomerase I

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

cte Chlorobaculum tepidum

Brite

KEGG Orthology (KO) [BR:cte00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cte03032]
    CT0055 (topA)
   03400 DNA repair and recombination proteins [BR:cte03400]
    CT0055 (topA)
Enzymes [BR:cte01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     CT0055 (topA)
DNA replication proteins [BR:cte03032]
Prokaryotic type
  DNA Topoisomerases
   CT0055 (topA)
DNA repair and recombination proteins [BR:cte03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CT0055 (topA)

SSDB

Motif

Pfam:

Topoisom_bac zf-C4_Topoisom Toprim Toprim_4 Zn_ribbon_recom Lar_restr_allev Ogr_Delta

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

CyanoBase:

UniProt:

Position

54413..56812

AA seq 799 aa
MASKSATPSARNRTLIVVESPSKAKTINKYLGDDYTVYASVGHIKDLPKKEIGIDFDNHY
EPRYEVIAGKEKVVRQLKKLAGEADKVLIATDPDREGEAIAWHISNEIDFAKKPVFRVLF
NEITRNAIIEAIGHPQQIDYRLVRSQQTRQALDKIVGYKISPFLWNVVYRGLSAGRVQSV
VLRLICERETEIEAFTPQEYWTIYADFTTENGETFRTKLVKVNGEKPDITSGEQAEAIAS
AIQGRLFAISEIVPKVIQRKQPLPFTTSLLQQAASNQLGFGSQKTMRTAQQLYEGIDLGS
EGATGLITYMRTDSTRISGEAVAQAHDYISQQFGPEYKGFGGQGKAGKNAQDAHEAIRPT
SVTRTPESLRRHLTPDQFRLYELIWKRFVASMMAPAKIEQTRVDVDDQKKEFVFRATGNK
VLFPGFFRVYDDQQELDYEAQKSTREELEKEQIVKLPERLSVDEQLKLAELDRRQSFTRP
PARYTEASLVKELDNYGIGRPSTYASIFSTLQDRRYVELQKKKIIPTELGRDVSAILVAN
FPDLFNVRFTAEMEDELDKVASGDDEYEKVLDRFYRPLESVLSHRKSDPLIPQNRDAVLC
EKCGKGHMIVKWTTSGKFLGCSNYPKCKNIKAITTNKAKPKETGVRCPVCGEGHMLLRNG
RLGPFLACSNYPKCNTLLNLSKQRHIEPIKTPPITTDLACPKCGAPMYLRTGKRGLWLGC
SKFPKCRGRLSWSTLDPETQARWEKAMNEHMAAHPSLAITMLDGKPAPMNLPIEDIIARA
EDAGLISATSEQPEAEATT

NT seq 2400 nt +upstreamnt +downstreamnt
atggcttcaaaaagcgcaaccccttcggccaggaacaggaccctcatcgttgtcgagtct
ccatccaaggcgaaaaccatcaacaaatatctgggcgacgattacacggtttacgcttca
gtcggtcatatcaaggacttgccgaaaaaagagatcggcatcgactttgacaaccactac
gaaccgcgctatgaagtgatcgctggcaaggagaaggtggtgcggcagctcaagaagctc
gccggggaggccgacaaggtgctgatcgccaccgaccctgaccgcgaaggcgaggccatt
gcctggcacatctccaacgagatcgacttcgcgaagaaacctgtcttccgtgtgctcttc
aacgagatcaccaggaacgccatcatcgaggctatcggccatccgcagcagatcgactac
cggctcgtgcgttcgcagcagacccggcaggctcttgacaagatcgtcggctataagatc
agtccattcctctggaatgtggtctatcgaggcctttcggcaggccgtgtgcagtccgtg
gtgcttcggctgatctgtgagcgtgaaacggagatcgaggcctttacgccacaggagtac
tggacgatctacgccgacttcaccacggaaaatggagagaccttccggacaaagctggta
aaagtcaatggcgagaaacccgacattacctccggcgagcaggccgaagcgatcgcgtca
gccattcagggccggctgttcgcgattagtgagatcgtgccgaaggtgatccagcgcaag
cagccgctaccgtttaccacctcgcttttgcagcaggcggcctcgaaccagctcggcttc
ggttcgcagaaaacgatgcgcaccgcccagcagctctacgaaggcatcgacctgggctcg
gagggtgctaccggtctcatcacctacatgcgtaccgattcgacccgcatcagcggcgag
gcggtcgctcaggcgcacgattacatctcgcagcagttcggcccggagtacaagggtttc
ggtggccagggcaaggcgggcaagaatgcccaggacgcgcacgaagcgatccggcccacc
tcggtgactcgcacgcccgaatcgctccgccgtcacctgacgcccgaccagttccgcctt
tacgagctgatctggaagcgcttcgtggcctcgatgatggctccggccaagattgagcag
actcgcgtggatgtggatgatcagaaaaaggagtttgtcttccgtgccaccggcaacaag
gtgctctttcccggttttttccgtgtctacgatgaccagcaggagcttgactacgaagcg
cagaaatctacccgtgaagagctcgaaaaggagcagatcgtcaagctgcccgagcgactt
tctgttgacgaacaactcaagctggccgaactcgaccgccgccagagctttacccgtccg
cctgcccgctacaccgaggcgagtttggtcaaggagctcgacaactacggtattggccgc
ccatcgacctacgcctcgatcttctcgacccttcaggatcggcgctacgtcgagctacag
aagaagaagatcatcccgaccgaactggggcgtgatgtctcggcgattctcgtggccaac
ttccccgatctcttcaatgtccgcttcacggcggagatggaggacgagctcgacaaggtc
gcctcgggtgatgacgagtacgaaaaggtgctcgaccgcttctatcgcccgctcgaatcg
gttttgagccaccgcaaaagcgatccgctcattccgcagaaccgcgacgccgtgctctgc
gaaaagtgcggcaaggggcacatgattgtcaagtggacgaccagcggcaagttcctcggc
tgctcgaactatcccaagtgcaagaacatcaaggcgattaccaccaacaaggccaaaccg
aaggagactggtgtgcgctgcccggtgtgcggtgaagggcacatgctcctgcgcaacggt
cggcttggcccgtttcttgcctgctccaactacccgaagtgcaataccctgctcaatctc
agcaagcagcgccacatcgagccgatcaagaccccgcccattaccaccgatctcgcctgc
ccgaaatgcggcgcgccgatgtatctcagaaccggcaaacgagggctgtggctgggctgc
tcgaaattccctaaatgccgtggcaggctttcatggagcacgctcgatccggagacgcag
gcccgctgggaaaaagcgatgaacgagcatatggcggcccatccgtccttggccatcacg
atgctcgacggcaagccagcaccgatgaatttgcccatcgaagacatcatcgcccgcgcg
gaggacgcaggactcattagcgccacaagcgaacagccggaggctgaagccacgacgtga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (33)   

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