KEGG   Chlorobaculum tepidum: CT0509
Entry
CT0509            CDS       T00088                                 
Name
(RefSeq) ribonuclease II family protein
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
cte  Chlorobaculum tepidum
Pathway
cte03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cte00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CT0509
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cte03019]
    CT0509
   03016 Transfer RNA biogenesis [BR:cte03016]
    CT0509
Enzymes [BR:cte01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     CT0509
Messenger RNA biogenesis [BR:cte03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CT0509
Transfer RNA biogenesis [BR:cte03016]
 Prokaryotic type
  tRNA degradation factors
   CT0509
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 Rrp44_S1 RNase_II_C_S1
Other DBs
NCBI-GeneID: 1005974
NCBI-ProteinID: NP_661409
CyanoBase: CT0509
UniProt: Q8KF23
Position
517042..519204
AA seq 720 aa
MGYGESRQLPGFWYVLHKLQEEGVIDKDSDRCYGWAGFEADTYEEHLIEGPHFPQPGKER
YKVGQIYTGKLTTHPNGYGFVDVDGFDDDIFISADMLGQSLHLDQVEVQVTKVPESYASR
QSPHQRCEGLVVNVIERRLVTVVGTLHRENRRFLLKPDQRKILPEIHIPLKAAKKAKAGD
KVLAGELEFLKSGTIQARVIEILGTAGESQVEVSAIARGLGIDETFEPELLTFAEKVREA
ITDEDLKERLDIRDKDVFTIDPVDAKDFDDALSIETLGNGGGYKVGVHIADVSHYVPENS
ALDKEARKRATSVYLVDRVIPMLPSRLSEKVCSLNPGVDRLAFSVFFNITKKGEVTKFEF
HKTVIHSKRRFTYEDVQQILDAGKGDYFRELQALDQLSKKIRAQRMESGGLEFETEEVRF
KLGSNGEPVEVIKKERLDSHRLIEEFMLLANRTVAAYLTARYAENEKNPHPVIYRVHGAP
QMEKVQVLASFVRKIGFDLKLDRKGKDSATVSSKALRELLQKVRGTNVEFLVNELVLRSM
SKAVYSPLNDGHFGLGFEHYTHFTSPIRRYPDLIVHRILFEYETTRKKRRKVTPERISQI
TATITEVCQITNEREKIATEAERESIKLKQVEYMSAHLGNTYDGVITGATEYGIYVRMTD
FAIEGLVHMRNLKDDYYEYDEATYSLVGRRKHRRLQIGQRLKVKVHEVDLTRRTIDLTLA
NT seq 2163 nt   +upstreamnt  +downstreamnt
atgggctacggcgagtctcgccagcttcccggcttctggtatgtcctgcacaagttgcag
gaagaaggcgtcatcgacaaggacagcgaccgctgctacggttgggctggtttcgaggcc
gatacctatgaggagcacctcatcgaggggcctcactttccgcaacccggcaaggagcgc
tacaaggtcggtcagatatacaccggcaagctgacgacccatccgaacggctacggcttt
gtggatgtcgatggttttgacgacgatattttcatcagtgccgacatgcttggccagtcg
ctgcatctcgaccaggtcgaggtgcaggtcaccaaagtacccgaatcctatgcttcgcgc
cagtcgccgcaccagcgctgcgaaggcctcgtcgtcaacgtgatcgaacgcaggcttgtg
accgtggtcggcacgctgcaccgcgagaatcgccgtttcctgctcaagcccgatcagcgc
aagattctgcccgagattcatattcccctcaaggcggccaaaaaggccaaggccggtgac
aaggtgcttgccggagagctggagttcctcaagagtggcactattcaggccagggtgatc
gagattcttggcacggcgggcgaatcacaggtcgaggtgagcgctatcgctcgcggtctc
ggtatcgacgaaaccttcgagccggagctcttgaccttcgccgaaaaggttcgcgaagca
attaccgatgaggatctgaaggagcgactcgacatccgcgacaaggatgtttttaccatc
gatccggtcgatgcgaaggatttcgacgacgcgctctccatcgagacgcttggcaatggc
ggcggctacaaggtcggcgtgcacatcgccgacgtgtcgcactatgtgccggagaattcg
gcactcgacaaggaggcccgcaagcgcgcgacctcggtctatctggttgatcgcgtgatt
ccgatgctgccctcccgcctctccgaaaaggtgtgcagccttaatccgggggtggatcgc
ctggctttctcggtctttttcaacatcaccaaaaagggtgaggtcacgaagtttgagttt
cacaagacggtcatccattcgaaacgccgcttcacctatgaggatgttcagcagattctc
gatgcgggcaagggcgattacttcagggagttgcaggcgctcgaccagctcagcaagaag
atccgtgcccagcgcatggagtcgggcgggcttgaattcgagaccgaggaggtgcgcttc
aaacttggcagcaatggcgagcctgtcgaggtgatcaagaaggaacggctcgacagccac
cgcctgatcgaggagttcatgctgctggccaaccgcacggtggctgcttacctgactgcc
cgttatgccgagaacgaaaagaatccccatccggtgatctaccgcgtgcacggcgcgccg
cagatggagaaggtgcaggtgctggccagcttcgtgcgcaagattggctttgacctcaag
ctcgaccgcaagggcaaagacagcgccacggtgtcgtccaaagcgctgcgcgagctgttg
caaaaggtgcgcggcaccaacgtcgagttcctggtcaacgagctggtgctgcgctccatg
tcgaaggcggtttattcgccgttgaacgacggccacttcggcctcggtttcgagcactac
acgcactttacctcgcccatcaggcgctaccctgacctgatcgtgcaccgcattttgttc
gagtacgaaacgacgcgcaaaaagcgccgcaaggtcacgcccgaaaggatcagccagatc
accgcgactatcaccgaggtgtgccagatcactaacgagcgcgagaagatcgctaccgaa
gcggagcgcgagtcgatcaagctcaagcaggttgagtacatgtcggcgcatctcggcaac
acctacgacggcgtcatcaccggtgccaccgaatacggcatctacgtgcgcatgaccgac
tttgccatcgaaggcttggtgcatatgcgcaacctcaaggacgactactatgagtacgac
gaggctacctactcacttgtcggcagacgcaaacaccgccgcttgcaaatcggccagcgg
ttgaaggtaaaggtgcacgaagtcgatctgacaagaagaacaatcgatctcacgctggcg
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system