KEGG   Clostridium thermosuccinogenes: CDO33_05950
Entry
CDO33_05950       CDS       T05300                                 
Symbol
polC
Name
(GenBank) PolC-type DNA polymerase III
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
cthd  Clostridium thermosuccinogenes
Pathway
cthd03030  DNA replication
cthd03430  Mismatch repair
cthd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cthd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CDO33_05950 (polC)
   03430 Mismatch repair
    CDO33_05950 (polC)
   03440 Homologous recombination
    CDO33_05950 (polC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cthd03032]
    CDO33_05950 (polC)
   03400 DNA repair and recombination proteins [BR:cthd03400]
    CDO33_05950 (polC)
Enzymes [BR:cthd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CDO33_05950 (polC)
DNA replication proteins [BR:cthd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     CDO33_05950 (polC)
DNA repair and recombination proteins [BR:cthd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     CDO33_05950 (polC)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NII HHH_6 DNA_pol3_a_NI tRNA_anti-codon RNase_H_2 DEDDh_C HHH_3 POT1 tRNA_anti_2 YhfH
Other DBs
NCBI-ProteinID: AUS96020
UniProt: A0A2K2FKV0
Position
1384667..1388989
AA seq 1440 aa
MQNVATSNGKLLDLFPEIRLEEDVYNLLANLSIQNINVYRKSRKLEIFTLSRELIPAEVI
LNLERNLEKSFNLESVGIKVKYDLDMSPEKKLELYQDSIIHMASKEVAMCRGILAGSRWE
LADKKLMIRLGTKGENILKSKACDSLIERIIEECFSFKVKVEFIDCEMDEQLKEEYIRQK
SDVEAKIISKVITGASVAENKPEYKVSQNGRKDEQQEGKSSDVILGKNFSDSIIKMSEVT
QDSGKVSVCGEIFRVEFKEIRGERYICTFDITDKTNSLTAKFFIKKNDYDLMKELVKEGT
YVKLRGEVQYDKFAREIVIMASDIVEEKKPVRIDDAEVKRVELHLHTQMSAMDGVTSAAD
LVKRAAKWGHKAIAITDHGVVQAYPDAYSTAKKENIKIIYGVEAYLLDDRIPVVYNPKDQ
CLDDSFVVFDIETTGLDAEKDKITEIGAVKIKGGKIVDRFSTFVNPEVPIPAHITKLTGI
TDEMVKDAPVISAALDEFLRFSEGSVLVAHNANFDVGFIRHNCRVLGKDATFTVLDTLQL
CRNLFPELGRHKLNIVAKHLGVSLENHHRAVDDSKATADILLICFDKLKERGIHAISEID
TAFEGNYDFTKAASYHAVILVKNTVGLKNLYKLISRSHLEYFHKKPRVPRKLFMEYREGL
IIGSACEAGELYTAIVNKKSEEEVERIASFYDYLEIQPLGNNRFLVDSGKVESEEELKNI
NRRIVALGEKLNKPVVATCDVHFMDPEDEVFRRILMAGQGFADADNQAPLYFRTTKEMLS
EFDYLGPEKAYEVVVTNTNLIADMIENVPPVLPGTHPPRIDGAEEEIKNLAESRARELYG
DPLPQIVKERLDKELNSIIKNGFAVMYLIAQKLVHKSLSDGYLVGSRGSVGSSFVANMTG
ITEVNSLQPHYLCENCKHSEFITDGSVDCGFDLPDKNCPVCGTKMKKDGYDIPFETFLGF
DGDKEPDIDLNFSGEYQPVIHKYTEVLFGEGHVFRAGTIGSVAEKTAFGFVKNYLEERGK
VVTNAEINRLVKGCTGVKRTTGQHPGGIMIVPKDKEIYDFSPIQHPADDTQSDTITTHFD
YNFLHGSILKLDILGHTVPTTIRMLQDLTGVEPTKIPLDDEKTMQLFNSTEPLGVTPEEI
GSPVGTFGIPEFGTGFAIGMLVDTKPKAFSDLIRLSGLSHGTDVWRGNAQDLIKNNIATL
SECICCRDDIMLYLKYNGVPPKTAFKIMEDVRKGKGLKEEYEQVMRENNIPEWYIESCKK
IKYMFPKAHAAAYVMMAFRIAWFKVYYPEAFYATYFTVSVDDFDADIMTRGQDKVRNKLK
ELERKLKENTISPKEKSMITMLEIVNEMYARGIKLLPVDLYKSDAVKFQVTENGIRPPFI
ALQGLGEAAARSIAEARAQGEFLSIDDLKIRGKVGKGVLEILQNHGCLEGLPESNQLSFF
NT seq 4323 nt   +upstreamnt  +downstreamnt
gtgcagaacgtagcaacaagcaatggaaagctgttggacttgtttcctgaaatcaggctg
gaagaggatgtttacaaccttctggccaatctttcgatacagaatataaatgtttacaga
aaatccagaaagcttgagatattcactttatcaagggaattaattccggcagaagtcata
ctgaatctggaacgaaatctggaaaaaagctttaatctggaatcggtgggaataaaggtc
aaatatgatttggatatgtctccggagaaaaaactggagctgtatcaggacagtataata
catatggccagcaaagaggtggccatgtgccgcggaattctcgcaggcagcagatgggag
cttgcggacaaaaagctgatgatccggctaggcacaaaaggagaaaacatattgaagtcc
aaggcctgcgacagcctgatcgagagaatcatcgaggagtgcttttcttttaaggttaag
gtagaatttattgattgtgagatggatgaacagttgaaagaagaatatatcaggcaaaaa
tctgatgtggaagccaaaattatcagcaaagtcataaccggagcatctgttgctgagaac
aagccggagtacaaggtttcacaaaatggacggaaggatgaacagcaggaaggaaaaagc
tctgatgtgattttgggtaagaatttcagcgacagcattattaaaatgtcggaggtgacc
caggactcggggaaggtatccgtatgcggcgaaattttcagggtcgagttcaaggaaata
cggggagaacgttatatatgcacttttgatatcaccgataaaaccaattcccttactgca
aagttttttatcaaaaagaatgattatgaccttatgaaggagctggtgaaggaagggacc
tatgtaaaactccgcggagaggtgcagtatgacaagtttgcgcgggagatcgtgataatg
gcttccgatatagtggaggaaaagaagccggtaagaatagatgatgcggaagtcaagagg
gtggagcttcaccttcacacgcagatgagtgcgatggatggagttacatcggcagccgat
ctggtgaagagggcggcaaaatggggccacaaggctattgccattaccgaccacggagtg
gtgcaggcctatcccgatgcctacagcacagcaaaaaaggaaaatataaaaatcatatat
ggagttgaggcataccttttggatgacaggatacctgtggtatacaatcctaaggatcaa
tgcctggacgactcctttgtggtttttgacattgaaaccaccggccttgatgcggaaaaa
gacaagataacggagataggagccgtaaaaataaagggaggaaagatagtcgacaggttc
agcacctttgtaaacccggaagttccgataccggcccatataacaaagctcaccggaata
actgatgagatggtaaaggatgctccggtgataagcgctgctttggatgaatttctgcgc
ttctcggagggcagcgtgctggttgcccacaatgccaattttgatgtggggttcatcagg
cacaattgccgggtgctggggaaggatgccacatttaccgttttggacacccttcagctt
tgcagaaacctgtttccggagctgggaaggcacaagctcaatattgtggcaaaacatctg
ggagtgtccctggaaaaccatcaccgtgccgtagacgattcaaaagcgacggccgatatc
cttcttatttgctttgataagctgaaggagagaggtatacatgctataagcgagatagat
acagcttttgagggcaactacgatttcacaaaggctgcatcctaccatgccgtaatactg
gtcaaaaatacggtgggtttgaagaacctttacaagctgatatcccggtcccatctggaa
tatttccataaaaagcccagggttcccagaaagctttttatggaatacagggaaggactg
ataatcggttctgcctgtgaagcaggagagctttacacggcaatcgttaacaaaaaatcg
gaagaggaagtggagcgcatagcttccttctatgactatcttgagatacagcccttgggg
aacaaccgattcctggtggacagcggaaaggtggaaagtgaagaggaactgaaaaatata
aacagaaggatagtggcgttgggtgaaaagcttaataagccggtggtggccacctgcgac
gtccatttcatggatccggaggatgaggttttccggcgcatactcatggcggggcagggg
tttgccgacgccgacaatcaagcgcctttatatttcagaacaacaaaggaaatgctgtcc
gagtttgattatttgggacctgaaaaagcttatgaggtggtggttaccaatacaaacctg
atagccgatatgatagaaaacgttccccctgttctcccgggaacccatcctcccagaata
gatggtgccgaggaggaaataaaaaacttagccgaaagcagagcccgggagctctatggt
gatccgctgccccagatagtaaaagaacgtcttgacaaggaacttaactctatcattaaa
aatggttttgcagttatgtacctcatcgcccagaagctggtgcacaagtctttgagcgat
ggctatctggtaggatcgaggggatcggtaggttcctcttttgtagccaatatgacaggg
ataacggaggttaactccctgcaaccccattatctttgtgaaaactgcaagcattcggaa
tttatcaccgacggtagcgttgactgcggatttgacctgccggataagaactgtccggta
tgcggcaccaaaatgaaaaaggacggttacgatatccccttcgaaacattccttggcttt
gacggcgacaaggaaccggatattgacctgaacttctccggtgaatatcagcctgtcatc
cataaatataccgaggttttgttcggggaaggccatgttttcagagccggaaccatcggc
tccgttgcggagaaaacagccttcgggtttgttaagaactacctcgaggaaaggggcaag
gttgttactaatgcggagataaacaggttggtcaaggggtgtaccggggtgaagagaacc
acgggacagcatccgggaggtataatgattgtgcccaaggataaggagatatatgatttt
tctcccatacagcatcctgcggatgacacccaatcagataccataaccacccactttgat
tacaacttcctgcatggcagtatactaaagctggatatactgggtcatacggtgccgaca
accatacgcatgctgcaggaccttacgggggttgagcctacaaaaatacctttggatgat
gagaaaaccatgcagctcttcaacagcaccgagccactgggggttaccccggaggagata
ggaagcccggtggggactttcggcatccctgaatttggtacaggctttgccatcggaatg
ctggtggatacaaaacctaaagccttttccgaccttataaggctgtcggggctttcccat
ggtaccgacgtatggcgcggcaatgctcaggatctgataaagaacaatattgcgaccctt
tcggaatgtatatgctgccgcgatgatataatgctgtaccttaaatataatggagtccct
cccaaaactgcgtttaagataatggaagatgtccgtaagggtaaagggctgaaggaagaa
tatgaacaggttatgagggagaacaatatacccgaatggtatatcgaatcctgcaaaaaa
ataaaatacatgtttccgaaggcgcatgctgctgcatatgtcatgatggctttcagaatt
gcatggttcaaggtgtattatcctgaagccttttatgcgacatattttaccgtgtctgtc
gacgattttgatgctgatataatgacccgtggacaggataaggtcaggaacaagcttaag
gagttggaaagaaagctgaaggaaaacaccatatcgcccaaggaaaaaagcatgataaca
atgctggaaatagtaaatgagatgtacgccagaggtataaagctgctgcccgtagacctg
tacaaatccgatgcagtcaaattccaggtgacggaaaacggcataagacctccctttata
gccctccagggcttgggagaggcagcggcgcgaagcatagccgaagcccgcgcccagggt
gagtttttgtcaatagatgaccttaagataaggggcaaagtgggtaaaggagtgctggag
atactgcagaaccacggatgcctggaagggttgccggaaagcaaccagttgagtttcttt
tag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (27)   

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