KEGG   Carboxydocella thermautotrophica: CFE_1450
Entry
CFE_1450          CDS       T05389                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
cthm  Carboxydocella thermautotrophica
Pathway
cthm02024  Quorum sensing
cthm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cthm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CFE_1450
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CFE_1450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cthm03019]
    CFE_1450
   03036 Chromosome and associated proteins [BR:cthm03036]
    CFE_1450
Messenger RNA biogenesis [BR:cthm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CFE_1450
Chromosome and associated proteins [BR:cthm03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CFE_1450
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AVX20639
UniProt: A0A2R4N0U3
Position
1432126..1432386
AA seq 86 aa
MTTTKSTINLQDAFLNQVRKENIPVTVYLVNGFQLKGLVRGFDNFTVILEQEGKQQMVYK
HAISTVAPIKPVHFSFSDNRNVNQNQ
NT seq 261 nt   +upstreamnt  +downstreamnt
atgacaacaactaaatccactattaatttacaggatgcttttttaaatcaggtccggaag
gaaaatatcccggtaactgtttatcttgttaatggttttcaacttaagggactggtaaga
ggctttgataattttactgttatcttagaacaagaaggtaaacaacaaatggtttataaa
cacgcaatttcaacagtagctcccattaagcctgttcatttttctttttctgataaccgc
aatgttaaccaaaaccagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system