KEGG   Carboxydocella thermautotrophica: CFE_1535
Entry
CFE_1535          CDS       T05389                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
cthm  Carboxydocella thermautotrophica
Pathway
cthm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cthm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CFE_1535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cthm03019]
    CFE_1535
   03016 Transfer RNA biogenesis [BR:cthm03016]
    CFE_1535
Enzymes [BR:cthm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     CFE_1535
Messenger RNA biogenesis [BR:cthm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CFE_1535
Transfer RNA biogenesis [BR:cthm03016]
 Prokaryotic type
  tRNA degradation factors
   CFE_1535
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH_2 Sec3_C-term Thioredoxin_6 PCB_OB S1_2
Other DBs
NCBI-ProteinID: AVX20713
UniProt: A0A2R4N0W1
Position
complement(1505016..1507109)
AA seq 697 aa
MERTFQLEVGGRTMSFLTGKLAKQANGAVMAAYGDTRVLVTATCSKEPREGIDFFPLTVD
YEERLYAAGKIPGGFIKREGRPGEKAILAARLIDRPIRPLFPEGFRNDVHIVATVMSVDQ
DHDPRVVALCGASVALTISDIPFNGPIGAVIVGRVDGKLIINPNLEQSEKSDMHIVVAGT
KDAVMMVEAAANEVPEDEILEAIMFAHEEIKKIVEFQIQVQTELAVVKREIPLAQPDPEM
DQAVRAFIAEEINQAVRIFDKQQRQDTLEELRKKVLEHFQEQYPEREKELEKVFHNILKE
TVRQMIITEGIRPDGRKLDEIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVTTLGAIGDEQ
ILDDLGVDESKRYMHHYNFPPYSTGEARPLRAPSRREIGHGALAERALEPMIPDEKVFPY
TIRLVSEVLESNGSSSMASVCGSTLSLMDAGVPIKRPVSGVAMGLVKEGDIVRVLTDIQG
MEDALGDMDFKVAGTEIGVTAIQMDIKIAGIDRQILKMALEQARQGRLYILQKMLETLPA
PRKELSPWAPRLIFLTIHPDKIRTVIGPGGKTIKKIIDETGVKIDIEDDGRVFIYAIDQS
AGRKAQEMIEELTEEVEVGKTYLGKVVRIVEFGAFVEVLPGKEGLVHISQLSEQRVNKVE
DVVSVGDQIPVKVIKIDDLGRINLSRKQAIQEEKQKG
NT seq 2094 nt   +upstreamnt  +downstreamnt
atggaacgaaccttccagttagaggtaggcggcaggaccatgtcttttttgaccgggaaa
ctggcaaaacaggccaatggtgctgtgatggcagcatatggcgatactcgggtcctggtt
acggctacctgttccaaggaaccccgggaagggattgatttctttcctttgacagtagat
tatgaagaaagattatatgccgctggtaagatcccaggcggtttcatcaaacgggaaggc
aggccgggggaaaaagccattctggctgcccgtttgattgacagacccatacgtccctta
tttcctgaaggttttcgcaatgatgtacatatagtagctactgtaatgtccgttgaccag
gatcatgacccgcgggttgtggctttgtgtggtgcatccgttgctctaaccatttctgac
ataccttttaacggacctattggggctgttatcgttggccgcgttgatgggaagcttatc
attaatcctaatctagaacaatctgaaaagagcgacatgcacatcgtcgtagcgggaacc
aaagatgcagtaatgatggtggaagctgctgccaatgaggttccggaagatgaaattctg
gaagccatcatgtttgcccatgaagaaatcaagaagatagtagaatttcagattcaggtt
caaactgaactggcagtggttaaacgggaaattccattggcccagccagatcctgaaatg
gaccaggcagtcagggcatttattgccgaagagatcaaccaggcagtgcgaatttttgac
aaacagcaacggcaggatacattagaagaactgaggaaaaaagtgctagaacatttccag
gaacaatatccggaacgggaaaaagagctggaaaaagtatttcataacatcttgaaagaa
actgtacggcagatgattatcactgaaggaatccgtcctgatggccggaaactggatgaa
attcgtcctatctggtgtgaagtcggagttttgcccagaacccatggttctgctatcttt
accagaggacagacccaggtactgaccgttactactctgggggcgattggggatgaacag
attctggatgacctgggagtagacgaatcaaaacgctatatgcatcattacaattttccg
ccttatagcacaggagaagccagaccgctccgggctccatcccgacgggaaatcggtcac
ggcgctctggcagaaagagctctcgaacctatgatacctgatgaaaaggtcttcccctat
actatccgcctggtttccgaagtcctggaatccaatggttccagttccatggccagcgtt
tgcggcagcaccttgtccttaatggatgcaggtgtacctatcaagcgccccgtttccggt
gtagctatgggtctggttaaggaaggagatattgtccgggtcctgaccgatatccagggt
atggaagacgctctgggggatatggatttcaaagttgcaggtactgaaatcggggtaaca
gccattcaaatggatatcaagatcgctgggattgaccggcagatcctcaagatggctctg
gaacaggcccgacagggacggctgtatattcttcagaagatgctggagactttaccggca
ccccgtaaggagttgtcaccatgggctccgcgcctgattttcctgaccattcatccggat
aaaatcaggacggtgattggccctggtggtaaaaccatcaagaaaatcattgatgaaacc
ggagtaaagattgatattgaagatgatggccgagtcttcatatatgcaattgaccaatct
gctggtagaaaagcacaggaaatgatcgaggaactcaccgaggaggtggaagtaggcaaa
acttatctcggtaaagtagttcggattgtagaatttggcgcctttgtcgaagttctgccc
ggtaaggaaggcttagtgcatatcagtcagctttccgaacagagagtcaataaagtagaa
gatgtagtcagtgttggcgatcagattcctgttaaggtaatcaagattgatgatttgggg
cggatcaatctttcccgcaagcaagctatccaggaagaaaagcaaaagggttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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