KEGG   Carboxydocella thermautotrophica: CFE_1798
Entry
CFE_1798          CDS       T05389                                 
Name
(GenBank) bifunctional non-homologous end joining protein LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cthm  Carboxydocella thermautotrophica
Pathway
cthm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cthm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CFE_1798
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cthm03400]
    CFE_1798
Enzymes [BR:cthm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CFE_1798
DNA repair and recombination proteins [BR:cthm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CFE_1798
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S
Other DBs
NCBI-ProteinID: AVX20969
UniProt: A0A2R4N1S4
Position
1780628..1781485
AA seq 285 aa
MNLQLTNLDKPFWPEGITKGDLLAYYQAMASALLPLLCQRPLVLKRYPDGIEGEYFYQKQ
APPHTPPDFPRVHWHGIDYLYVKTVEHLLWIINTGAIEIHAWPSRVPRLDQPDILLFDLD
PAPGVPFSQVCQAALLVKAALEKLGLVGFVKTSGSRGLHIFVPIQPGPASGQLRRALALL
CQTLVQVWPTGLTTEFSKSKRQGKVYLDYLQNTTGKSTAWVYSVRPLPGAPLSWPVSWDE
VEAGNLNPQQFTLHNYLQYIPQARQLWGDFFQQARSAAGLLALLS
NT seq 858 nt   +upstreamnt  +downstreamnt
atgaacctccagcttactaatctggataaacccttttggccggaaggcattaccaaggga
gatttgctggcctattatcaggctatggcatctgccctgcttcccctgctgtgccagcgt
cccctggtcctgaaacgttaccctgatggcattgagggtgaatatttttatcaaaaacag
gctccacctcacactccgccagattttccccgggtccactggcatggcatcgattatctt
tatgtaaaaactgttgaacacctgctatggatcatcaataccggggccattgagatccat
gcctggccttcccgggtaccccggctggaccagcccgatatcctcctctttgacctggat
cccgccccaggagtccccttttcccaggtctgtcaggctgccctgctggtcaaggctgcg
ctggaaaagctgggtctggtgggatttgttaaaacttccggttcccggggcttgcacatt
tttgtgcccattcaaccgggaccagcgagtggtcaattgcggcgggccctggccctgctc
tgccagaccctggttcaggtctggccgaccggtcttactaccgaattcagtaaaagcaag
cgccagggcaaagtctatctggattacctgcaaaataccaccggcaaatccactgcctgg
gtctacagtgtgcgcccattgccgggcgcacccctctcctggccggtcagctgggatgaa
gtcgaggcaggcaatttaaacccgcagcaatttaccttgcataattaccttcagtacatt
cctcaggcccggcagctctggggggatttttttcaacaggcccggtcggccgcaggttta
ctggctttactatcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system