KEGG   Thermochaetoides thermophila: CTHT_0002050
Entry
CTHT_0002050      CDS       T03100                                 
Name
(RefSeq) hypothetical protein
  KO
K14328  regulator of nonsense transcripts 3
Organism
cthr  Thermochaetoides thermophila
Pathway
cthr03013  Nucleocytoplasmic transport
cthr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cthr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CTHT_0002050
   03015 mRNA surveillance pathway
    CTHT_0002050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cthr03019]
    CTHT_0002050
Messenger RNA biogenesis [BR:cthr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     CTHT_0002050
   mRNA cycle factors
    P-body specific factors
     CTHT_0002050
SSDB
Motif
Pfam: Smg4_UPF3 RRM_1
Other DBs
NCBI-GeneID: 18254243
NCBI-ProteinID: XP_006690753
UniProt: G0RZ83
Position
Unknown
AA seq 805 aa
MATPVLLSRRANGATATQTNDESKAPKAKPPPQGEKIVIRRLPPGMTEDEFLKILGDEWK
PGNGKVDWLTFWPGKVSQHPSKPSRPARAYLHVIQRDLLPALLQTVQGAKWEDAKATWDD
PALISPPTVEFAVYKKIPGDKKRVDSKQGTIDSDPEFMAFLEALANPDAVKETRPELETS
AEEAAKNAVVTTTPLIEYLKEKRAAKAKELAAAKSAAKHARQESQNTKGKGAAAADDSKK
KSKDGRGDRDRDRDRDRDRDRDRDRDRDRESERKPKESVKILTKKAASEAANKKAVAAAE
AAAEAAKAAAAQLQQASQQNEKPSATEPLPKNRKAGIANAARILQRDLGLAPAKSARKAR
QEAAKSEAESKSTPSPKQGKEVSSKEATPASPAPAATHTPPSAQPSSSPTHEKGPSSTPA
GKGRGKKRGGGPGGGDDDNKPKTNPKKDNKGEKSSEQVPPKPTMILKKNKDSQHQQQQNT
SPSQAQPQHSTNQPQQQQQQRPSTQANKPQSPNNPKNTGGGGGGGQNPKKNEKQNQTANQ
NANPPSQQSSTPTPGATRAFIKHAPASQGVTDVLLREALSAFGTVTSVEIADRKKGFAYV
DFAEPSGLAKAMAASPVAVAQAMVTVLERREMAGKKGKGEREKEGGKKDGQGHGKDKGER
EREKKGRDQKGENNEEEKEKEREKEKEKEKEKEKEKEKEKEKEKEKEKQKQKENKAVVAA
AGGEGQQQQGQAQGQGQGQHKRGGRRRGGRGREKDGKEGGKEGGGEGKESGGRGGSGHHG
GKDGSGKKGGAEGAAAKGAPADNSS
NT seq 2418 nt   +upstreamnt  +downstreamnt
atggccactccagtcctactttcgagaagagcgaacggcgccacggccacccagaccaac
gatgagtctaaggcacccaaggcgaagccgcctcctcaaggcgagaagatagtcatccgt
cgcttgcccccagggatgacggaggatgagtttctgaagatcttgggcgacgagtggaag
ccgggaaacggtaaagtcgactggctcaccttctggccaggcaaggtctcgcagcatcca
tcaaaaccatcacgacctgcacgtgcctatctccatgtgattcaaagggacctgttgcca
gcactgctacagacagtgcagggggcgaaatgggaggatgctaaagcaacgtgggacgat
cccgctttgatctcaccccctactgtcgaatttgcggtctacaaaaagatccccggcgac
aagaagcgagtagatagcaagcaaggtaccatcgactctgaccccgagttcatggccttc
ctcgaggctctcgcgaatccagatgctgtcaaggaaacccgtcctgagcttgagacaagt
gccgaggaggctgccaagaatgcagtggtcactacgacgccgcttatcgaatatcttaag
gagaagcgagcggccaaagcaaaggaactcgctgcagcgaagagcgccgccaaacatgct
cgtcaggagtcgcagaatacaaagggcaagggcgctgctgcggcggatgattccaagaag
aagtcgaaggatgggaggggcgacagagacagagacagagacagagatcgtgacagggat
agggatagggatagggatcgcgacagagagtcggagaggaaacctaaagagtcggtcaag
attctcacaaagaaggctgcgtccgaggccgcgaacaagaaagctgttgccgctgctgaa
gccgctgctgaggctgccaaagcagctgccgcgcaactccaacaggcttcgcagcagaat
gagaagcccagtgcgacagagcctctgcccaagaatcgcaaagctggaatcgccaacgcg
gcacgcatcttacagcgcgatcttggtcttgctccagctaaatctgctcgaaaggcccgc
caagaagccgctaagtccgaagcagagagcaagtcgactccgtcaccgaaacagggcaag
gaggtatcctcgaaggaggcgacgccggcctctccagctccggctgcgacacatacccct
ccatctgctcagccctcgtcatcaccaacgcatgaaaaaggaccgtcgtccacacctgca
ggcaaaggccgcggcaagaagcgcggtggtggtcctggcgggggtgacgatgacaacaaa
cctaagacgaacccgaagaaagacaataagggggagaagtctagcgaacaggtaccacca
aaaccgaccatgattctcaaaaagaacaaggattctcagcatcaacagcaacagaatact
tccccatcacaggctcaaccacaacactcaacaaaccaacctcagcagcaacagcagcaa
cgcccttctacacaagccaacaaaccccaatccccgaacaaccccaaaaataccggcggc
gggggcggcggtggtcaaaacccaaaaaagaacgaaaaacagaatcaaacagccaaccag
aatgccaaccccccctcccagcagtcatcaaccccaactcctggcgcaacccgcgctttc
attaagcacgcccccgcctcgcaaggcgtaaccgacgttctcctgcgcgaagccctctcc
gccttcggcaccgtcacatcagtcgagatcgccgaccgcaagaagggcttcgcctatgtc
gattttgcggagccctccggcctagcgaaagccatggccgcaagtccggttgctgtggcg
caggcgatggtgacggtgttggagaggagggagatggcggggaagaagggtaagggggaa
agggagaaagagggggggaagaaggatgggcaggggcatggaaaggacaaaggggagagg
gagagggaaaagaaggggcgggatcagaagggggagaataatgaagaggagaaggagaag
gagagggagaaggagaaggagaaagagaaggagaaagagaaggagaaagagaaggagaaa
gagaaggagaaagagaaggagaagcagaagcagaaggaaaacaaagctgttgtggctgcg
gcggggggggaaggccaacagcagcagggtcaagctcaaggacagggtcagggacagcat
aagcgcggcggtcggcgtcgtggtggtaggggaagagagaaggatggtaaggagggaggt
aaagaaggtggtggtgagggtaaggagtctgggggtagaggtggcagcggtcatcatggt
gggaaagatgggtctgggaagaaaggaggtgctgagggggctgctgctaagggagcaccg
gctgataacagttcgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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