KEGG   Thermochaetoides thermophila: CTHT_0063660
Entry
CTHT_0063660      CDS       T03100                                 
Name
(RefSeq) putative mRNA splicing factor
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
cthr  Thermochaetoides thermophila
Pathway
cthr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cthr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CTHT_0063660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cthr03041]
    CTHT_0063660
Enzymes [BR:cthr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     CTHT_0063660
Spliceosome [BR:cthr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    CTHT_0063660
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    CTHT_0063660
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C G-patch HA2_C HA2_N DEAD AAA_22 AAA_19 AAA_30 SRP54 nSTAND3 G-patch_2
Other DBs
NCBI-GeneID: 18260404
NCBI-ProteinID: XP_006696672
UniProt: G0SEG4
Structure
Position
Unknown
AA seq 1485 aa
MSSKRYAFVPMDDEPAPSKSDRRDRDRDRDRDRRDRRDRKRDRSHSRSRSKDHYRDRSRS
PSYKSRRRDGDDSPRRRSRSPRDRSSNTHSATTTTTTTLNKDDDREAKLAELRLKSRQQY
LAKREAEKLALLRKQVAEETAELRSGVHLTEREKAEFAKNREILRLAEERARIDDYQDGY
RLPDQYGVDSKKKEQALYKRHVERDEFGNEKHITEYEEWEREQTRAAKAQIKSREREDQG
EYDFLLDEDAITFVRDAAAAKFQPPSDGLTPEQRLLKQKIEEAERAQRTIQEVRKSLPVY
AYRDAFLDAVKEYQVLILVGETGSGKTTQIPQYLHEAGYTKGNRKIACTQPRRVAAMSVA
ARVADEMGVRLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREMVTSPDLADYSCIMIDEA
HERTVHTDILLALIKDLTRARPELRLIISSATLNAEKFSAYFDDAPIFNVPGRVHPVEVY
YTSAPESNYLEAALVTVFQIHATQPEGDILVFLTGQEEIERACERVEEIRRKLGKRVPEI
IALPIYSNMPSEMQAKIFEPTPPGARKVVFSTNIAETSLTIDGIVYVIDSGYVKENTFSP
VGTTGQSTLAVVPCSRAAANQRMGRAGRVKPGKCFRLYTKYAYLSEMDESPTPEIQRTSL
SSVVLQLKALGIDDLLGFDFLDPPPTELLIKSLNMLYALGALNSAGQLTRVGRQMGEFPT
EPMLAKALIAATQEGCVSEVLTIVSMLGEVGTLFFRPKDKKVHADSARARFTVRDGGDHL
TLLNIYNQWVEAEYSPIWARENFLAQRSLTRARDVRDQLAKLCDRILDGSEASCGGVNNP
TPILRALTAAFFLNAARLNRAGDGYRTLKNNITVYVHPSSVVRGMDPPPKVIIYHELVVT
SKEYVRSVIPVEPRWLSEFGAHYYDKKDVEVLEAKKLPRSTHESKPSNNHDLTTDTSPPP
SGRTGLSLYANLLEEESATISRDPVSNTSNASDDASAKKPIDPALRFQPIRRPQIKQPAK
PKAPVFAKAAAAAATAQPGAAATAVPAPAQRSTLADWAATEEDEWLYGTGEKRQRGGRRK
KKKKMQEEEYRETDWDELYDPARPTNVEEYLRSEERVREVREWKEVLYAHRRGREESESE
GEGGRVGLGNQFAPPPTLYAPPPPSPPKPSASIPDDETGEEAYRRRLAMSGLARPPPSPS
PPPPEPGGEESAPPPPPPPPPPPPPEEPSARPPPPPPTASSATISRAPVRYTQPAPDTST
PMDLDSDHSDSGEVNYDNIILPPTAPDSSSSAPLGTEGEAPPTKLRGKVFAQKLMEKYGW
KRGTGLGANNSGITSALRVQIEKRKRKPDAEGGGWADPKGGRGRIIAPKSYSSTAKQEGE
GQGEGKFGKTSCVVVLKNMLDNMEDLEAEIEAGLGQEIGEECGERYGRVERVCVDVIGRR
VFIKFVEAVSALRAVNALEGRVFNGNSIVARFYDEEKFEAGDYDG
NT seq 4458 nt   +upstreamnt  +downstreamnt
atgtcgtcaaaacggtacgccttcgtcccaatggacgatgagccggcgccatccaagagc
gaccggcgcgacagggacagggacagggaccgcgaccgacgagacagacgagaccgcaaa
cgcgaccgctcgcattcaagatctaggtccaaagatcactacagagaccgctcccggtca
cctagctacaagagccgacgccgtgacggtgatgactcgccccgacggcgatcccgctcg
ccacgcgatcgttcatcgaacacccattcagcgacaacgacgacaaccactacgctcaac
aaagacgacgaccgcgaagccaagctcgccgagctccgtctcaagtcgcgtcagcaatac
ctcgccaagcgcgaggccgaaaagctagccctcctgcgcaagcaggtcgcggaggaaaca
gccgagctgcggtccggcgtgcacctgacggagcgcgagaaggctgagttcgccaagaat
cgcgagatccttcggttagccgaggagcgcgcgcggattgatgattatcaggatggctac
cgcttgccggaccagtatggcgtcgatagcaagaagaaggagcaagcgctgtacaagagg
catgtagagagggacgagttcgggaatgagaagcatattaccgagtacgaggagtgggag
agagaacagacgcgcgcggccaaggcgcagattaagagtcgggagcgggaggatcaaggg
gagtatgatttcttgctggatgaggatgcgattacgtttgtgagggacgcggccgcggcg
aaatttcagccgccgtcggatgggttgacgcccgagcagaggctgctgaagcagaagatt
gaggaggctgagcgggcgcagaggacgatccaggaggtgcgcaagagtttgccggtgtac
gcctaccgcgacgcctttctggatgccgtcaaggagtaccaggtcttgatcctagtcggt
gagacgggttcgggtaaaacgacacagatcccgcagtacctacatgaagcaggctacacc
aagggcaaccgcaagattgcctgtacccagccgcgtcgagtagctgccatgagtgtcgcg
gcgcgtgtggcagacgaaatgggcgttcgtctgggccacgaagttggttactcgatccgt
ttcgaggactgcacgagcgagaagaccatcctcaagtacatgacggacggtatgctcctg
agggaaatggtcacgtcacccgacctggctgattactcctgcatcatgattgacgaggcg
cacgagcggacggtgcataccgatatcctcctggccctgatcaaagacttgacgagggcc
cgtcccgagctgcggctcatcatctcatctgccacgctcaatgccgaaaagttcagcgcc
tacttcgacgacgcgcccatcttcaacgtccctggccgtgtgcaccccgtcgaggtgtac
tacacgtccgcgccggaaagcaattacctcgaggccgcgctggtcacggttttccagatc
cacgcgacccagcccgaaggcgacatcctggtcttcctaacaggtcaggaagaaatcgag
cgagcgtgcgaacgagtggaagaaatccgtcggaaactgggcaaacgcgtccccgagatc
atcgccctccccatctactccaacatgccctcggagatgcaagccaagatcttcgagccg
actcccccaggagctcggaaggttgtgttttcgaccaacatcgccgaaacctccctcacc
atcgacggcatcgtctacgtcatcgacagcggctatgtcaaggaaaacaccttctccccc
gtcggcacaaccggccagtccactctcgccgtcgtcccctgctcccgcgccgcagccaac
cagcgcatgggtcgtgccggtcgtgtcaagcccggcaagtgcttccgtctgtacaccaag
tacgcctacctgagcgaaatggacgagtcacccacccccgagatccaacgcacttctttg
tcctccgtcgtcttgcagctcaaggccttgggtatagacgacctgctcggattcgacttc
ctcgacccgccgccgacagaactattgatcaagtcgttgaatatgctctacgccctgggc
gcactcaactccgccggtcagctgacccgcgttggcagacaaatgggcgagttccctacg
gaaccaatgctcgccaaggcgttgattgctgccacgcaagaggggtgtgtgtcggaggtg
ttgaccatcgtgtccatgctgggcgaggttgggacgctcttcttccggcccaaggacaag
aaggtgcacgctgatagtgccagggcgagattcacggtccgtgacggaggcgatcatctc
acgctgctgaatatatataaccagtgggtcgaggcagagtactcgcctatttgggcaagg
gagaacttcctcgcccaacggtcgctcacccgcgcacgggatgtgcgtgatcagcttgcc
aagctgtgtgaccgcatactcgacgggagcgaggcgagctgtggaggtgtgaacaacccg
actcccattctccgcgccctaacggcggcgttcttcctcaacgccgcacgcttaaacagg
gcaggggatgggtatcgcacgttaaagaacaatatcacggtgtatgtgcacccgagtagc
gtcgtgcgggggatggatccgccgccgaaggtgattatttaccacgagttggtggtcacg
tcgaaggagtatgtacggagtgtgattcccgtcgaaccgaggtggttgagtgagtttggg
gcacattattatgataagaaggatgtcgaggtgttggaggcgaagaaattgcctaggagc
acccacgagtcgaagcccagcaataatcacgaccttacgacagatacatcgccgcctcca
tcaggcagaacaggcctctccctctacgccaacctcctcgaagaggaatccgcaaccatc
tcccgcgacccagtctcgaacacctccaacgccagtgacgacgcctcagcaaagaaaccg
atcgaccccgccctgcgcttccaacccatccgtcggccgcaaataaaacaacctgccaaa
ccaaaagccccagtttttgccaaagccgccgcggcagcagcaacagcccaaccaggcgca
gcagccacagccgtcccagccccagcacaacgcagcaccctcgccgactgggccgcgaca
gaagaagatgagtggttgtacgggacgggggagaagagacagcgtggcgggaggaggaaa
aagaagaagaagatgcaggaagaagaatatagggagacagattgggatgagttgtatgac
ccggccaggccgacgaatgtggaggagtatttgaggagtgaggaacgggtgagggaggtt
agggagtggaaggaggtattgtacgctcataggagggggagagaggagagtgagagtgaa
ggggaggggggaagagtgggattggggaatcagtttgctccgccaccaacactgtatgcg
ccacctccgccgtcacctccgaagccgtcagcatctatacccgacgacgagactggagag
gaggcataccgtcgacggttggccatgtccggcctggcaaggccccctccatcaccttct
cccccacctccggagccaggaggagaagagtctgcccctcctcctcctccgcctcctccg
cctcctccgcctccagaagagccctcagctcgaccccctcccccgccgccgacagcaagt
tcagctactatatctcgtgctccagtacggtatactcaacccgcccccgacacctcaact
cccatggacctcgattcagatcactccgactccggcgaagtcaattacgacaacatcatc
ctgccccccaccgcccccgactcatcttcctctgcccccttaggcaccgaaggcgaagcg
cccccaaccaagctgcgtgggaaagtctttgcccaaaaactcatggaaaaatatggttgg
aagcgcggcaccggtttgggagccaacaattccggtattacttctgctttaagagttcag
attgagaagcgcaagcggaagccggatgctgagggaggagggtgggcggatcccaagggg
ggaagaggcaggattattgctcctaaatcttactcttctactgctaaacaagagggggag
ggtcaaggggagggcaagttcggtaagacgtcgtgtgtagttgtgctcaagaatatgctg
gataatatggaggatttggaggcggaaattgaggcaggactggggcaggagattggcgag
gagtgtggcgagcggtatgggcgggttgagagggtttgtgtggatgtgatcgggaggagg
gtgttcatcaagtttgtggaggctgtgagtgcgttgagggctgtaaatgctcttgagggg
agggtatttaatgggaactcgattgttgcgagattttatgatgaggagaagtttgaggcg
ggggattatgatgggtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (10)   
   PDB (10)   
Protein domain (12)   
   Pfam (12)   
All databases (34)   

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