KEGG   Chlamydia trachomatis D/SotonD5: SOTOND5_00645
Entry
SOTOND5_00645     CDS       T02560                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
ctro  Chlamydia trachomatis D/SotonD5
Pathway
ctro02020  Two-component system
ctro02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:ctro00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    SOTOND5_00645
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    SOTOND5_00645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ctro03021]
    SOTOND5_00645
Transcription machinery [BR:ctro03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     SOTOND5_00645
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_23 DNA_pol3_delta_C HTH_11 Terminase_5
Other DBs
NCBI-ProteinID: CCP53696
Position
689236..690546
AA seq 436 aa
MLHQHQTASVALCPALHLQQGLDMLQMPVAELATFVSQQITINPCFDLDSLDSPPESFSF
FPISEQHPFTETLSAYLLRQIDTNFASSQERTIAQYIVGNLSPEGLFLENPSLVAADLNV
SEHLFQKVWQRIQQLHPLGVGAPSLQSYWVSLLQTSPHKEALAIIRNHFPRLARCDFTTI
ARKMHATTTEILTFLRHAFASIPWCPAAGFSETLHPPAPALPDAYLSFSRNSSWDVSINK
DCLPSIRLNNTVLDIYPSLPREEKDHLSQQIRAAKQLLRNVKKREETLLAILRVLIPYQE
EFLLKKRTSPKAFSVKQIARELSLHEATVCRAIDNKTLATPVGLLPMRSLFPQAVGSCPD
QSKATILHWIHQWISTEKHPLSDAAISQKIIEKGIPCARRTVAKYRSQLNILPAHQRKHL
CSVLTTTRTENSRHTI
NT seq 1311 nt   +upstreamnt  +downstreamnt
atgttgcatcagcatcaaacagcatctgtagctctttgtcctgctttacatcttcaacag
ggactggatatgctacagatgccagttgctgaactcgcaacatttgtgtcccagcaaatc
actatcaatccctgttttgatctcgatagcttagattctcctccagaatctttttcgttt
ttccctattagcgaacagcatccttttacagaaactctatccgcataccttcttcggcaa
attgataccaattttgcctcttctcaggaacgtactatagctcagtatattgtaggcaac
ctctccccagaaggactctttttagaaaatcctagtcttgtggctgcagatttaaacgtc
tccgaacaccttttccaaaaggtatggcaacgtatccaacaattacatcctttaggagtc
ggagcgccttccctacagtcctactgggtatcgctactacagacatctccccataaggag
gctttagctattattcgcaaccatttccctagattagctcgttgtgatttcactactatc
gctaggaaaatgcatgcaaccacaacagagattcttacgtttcttagacacgcttttgct
tccatcccttggtgtccagcagcaggcttttccgagacacttcacccccctgctccagcg
cttcctgatgcctacctttccttctcgcgaaactcttcttgggatgtctctattaataaa
gattgtctcccctctattagactcaacaacaccgtactagatatctatccttctcttcct
cgtgaagagaaagaccacctatcgcaacaaatccgagcagcaaaacaattgcttcgcaat
gtaaaaaaacgagaagaaacgttattggctatccttcgagttctcatcccctaccaagaa
gagttccttcttaaaaaacgcacctctcctaaagctttttctgtaaaacaaatagctcgc
gaactctctcttcatgaagctaccgtttgtcgtgccattgataataaaacgttagcaacc
cctgttggattactccctatgcgatcgctatttccacaagcggttggatcctgccccgat
caatctaaagcaactattttgcattggatccaccagtggatttctacagaaaaacatcct
ctatctgatgcagctattagccaaaaaattattgagaagggcatcccctgcgcacgacgc
acagtagccaaatatcgttcgcaactgaatatcctccctgcgcaccaacgcaaacaccta
tgctctgttttaacaacaacacgcacagagaattctcgacatactatctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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