KEGG   Acetivibrio thermocellus DSM 1313: Clo1313_0739
Entry
Clo1313_0739      CDS       T01933                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
ctx  Acetivibrio thermocellus DSM 1313
Pathway
ctx03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ctx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Clo1313_0739
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ctx03400]
    Clo1313_0739
Enzymes [BR:ctx01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Clo1313_0739
DNA repair and recombination proteins [BR:ctx03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Clo1313_0739
SSDB
Motif
Pfam: AAA_19 HHH_4 AAA_30 SH3_13 UvrD_C_2 HHH_5 AAA_11 Viral_helicase1 Helicase_RecD DEAD SLFN-g3_helicase PIF1 AAA_22 AAA CbiA AAA_24 HHH HHH_2 nSTAND3 T2SSE AAA_28 ResIII TrwB_AAD_bind SRP54 LHH NTPase_1 HHH_3
Other DBs
NCBI-ProteinID: ADU73817
Position
851647..853773
AA seq 708 aa
MDYLSGVVERITFVNEENGFSVVKIKSKGFSDLVTAVGNMASVNVGAVVSLRGEWKYDSK
FGRQFNVYHYEESIPATVAGIEKYLGSGLIKGIGPVNAKRIVKVFKEDTIRVIEEEPDRL
IEVPGIGKKRVEMIKEAWQNQKEIKNVMLFLQSHGVSTAFAVKIFKTYGSDSIKIVKENP
YRLADDIWGIGFKTADKIAQNMGYDKESYARIRSGIMYALNEFANDGHCFAKKDELVNKA
SELLGVELEKVETAIQHMLEEKSVIMEEDDAVYLPPFYYSEVGVARRIREIIETKSMYSF
YNFDGIIEDLQRECNIQYDEVQIEAIRKAVVSKFMVLTGGPGTGKTTTTLAIIKVFQKLG
ATVLLAAPTGRAAKRMSEATGMEAKTIHRLLEYSPQDGYKKNDDNPLECDVLIIDETSMI
DIILMYNLLKAVSNNTVVILVGDVDQLPSVGAGNVLKDIIESGMVTVVRLMRIFRQAMGS
AIVTNAHKINHGEYPVLKGGKNSNFFFIEEEDPEKIVELVRELCSKRLPGYYKINPLNDI
QVLCPMQKGVVGAQNLNTVLQETLNPCDISIKYGGTIYKLNDRVMQIKNNYDKNVFNGDM
GIITDIDQEEKTVRIKFDDAEVEYDVTELDEVTLAYAVTVHKSQGSEYNFVVAPFTMQHY
MMLQRNLLYTCVTRAKKSPRADRFKKGAGVLHKKFQKYGQKYQTCPKT
NT seq 2127 nt   +upstreamnt  +downstreamnt
atggattacttgagcggagtcgtagaaaggataacatttgttaatgaagagaatggcttt
tctgtcgtaaaaataaagtcgaaaggtttttcagacctggtgacggcagtggggaatatg
gcttcggtaaatgtcggagccgtcgtaagccttcgaggggagtggaaatacgactctaag
tttggcaggcagttcaatgtataccattacgaagaatcaatacctgccactgttgccggt
attgaaaagtatttgggaagcggacttattaagggaatagggcctgttaatgccaaaagg
attgtaaaagtgtttaaagaagacaccataagggtaattgaggaggaacccgacaggctc
attgaagttccaggcatagggaaaaaacgggtggaaatgataaaagaggcgtggcagaat
caaaaggaaataaagaatgtcatgctttttttgcagtcccacggtgtttctacggcgttt
gccgtgaaaatatttaaaacatacggaagtgacagcataaaaattgtaaaggaaaaccca
tacagacttgcggatgacatatggggaatcggttttaaaaccgcggacaaaatagcccaa
aatatgggatatgacaaggagtcttatgcacgcatcaggtccggcataatgtatgcatta
aacgaatttgccaatgacggacattgctttgccaaaaaagacgaacttgtaaataaggct
tcggagctgcttggggttgagttggagaaagtggagactgccatacagcatatgctggaa
gagaaatccgtaataatggaagaagatgatgcggtttacctcccgcctttttattacagt
gaagtgggagttgccagaagaatacgggagataattgagactaaaagcatgtacagcttt
tacaattttgatgggataatagaggacctccaaagagaatgcaatattcaatatgacgaa
gtgcagattgaagccatcagaaaagcggttgtgtcaaaattcatggttcttaccggcggt
ccgggcaccggtaagactacaaccactcttgcgataataaaggtatttcaaaaactgggt
gccacagtcctccttgccgcaccaaccggaagagcggcaaagcgtatgtctgaagctacc
ggtatggaggcaaagaccatacaccgtttgctggaatacagtcctcaggacggatataaa
aaaaatgacgacaatcctttggagtgtgatgtgctaatcattgatgagacttcaatgatt
gacattatcttgatgtacaatcttcttaaagccgtttcaaacaatacggtggtgatactg
gttggggacgtggaccagcttccttcggtgggagcaggaaatgtactgaaagacattata
gaatcgggtatggtaactgtggtaaggcttatgaggatattccggcaggccatgggaagc
gcgatagtaaccaatgcgcataaaataaaccatggtgagtatccggtcttaaaaggcggc
aaaaacagtaactttttcttcattgaagaagaggacccggaaaagattgtagaacttgtc
cgggagctttgttcaaaacggcttcccggctactacaaaataaatcctctaaatgacatt
caggttttgtgtcccatgcaaaagggagtggtgggagcgcaaaatctcaatacagtgctt
caggagactctaaatccctgcgatatttccataaaatacggcggcacaatttacaaatta
aatgacagggtaatgcagattaagaacaattatgataaaaacgtatttaacggagacatg
gggataataacggacattgaccaggaagagaaaaccgtgcgcataaagtttgatgatgcc
gaggttgagtatgatgtgacggagctggacgaggttactctggcatatgcagtcacggtc
cataaaagccaggggagtgagtacaactttgtggtggcaccctttacaatgcagcattac
atgatgcttcaaagaaaccttttatacacatgcgttacaagagccaaaaaaagtcctcgt
gctgataggttcaaaaaaggcgctggggtgttgcataagaaattccagaagtatggacag
aaataccaaacttgcccaaagacttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (27)   
   Pfam (27)   
All databases (36)   

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