KEGG   Acetivibrio thermocellus DSM 1313: Clo1313_1803
Entry
Clo1313_1803      CDS       T01933                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
ctx  Acetivibrio thermocellus DSM 1313
Pathway
ctx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ctx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Clo1313_1803
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ctx03019]
    Clo1313_1803
   03016 Transfer RNA biogenesis [BR:ctx03016]
    Clo1313_1803
Enzymes [BR:ctx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     Clo1313_1803
Messenger RNA biogenesis [BR:ctx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Clo1313_1803
Transfer RNA biogenesis [BR:ctx03016]
 Prokaryotic type
  tRNA degradation factors
   Clo1313_1803
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH_2 GcvP2_C DnaT_2
Other DBs
NCBI-ProteinID: ADU74859
Position
complement(2102734..2104836)
AA seq 700 aa
MYKTFSMELAGRTLTIETGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVD
YEERLYAVGKIPGGFIKREGKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQ
DNSPELAALLGSSIAVSISDIPFNGPVGAVILGLIDGEVIINPTEKQREISQMYVTLAGT
RNKIVMIEAGANEVPDEVMLDAIKKGHEEIKKIVDFIDGIVKEVGKPKFEYESAEVPEEI
FNAVREYAYDKMREAVLAVDKQVRDKNIDDLTKEITEHFAEVFPEMEPAIKEAIYKLEKK
VVREYILEEGRRVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDVQ
ILDGIDTEETKRYMHHYNFPGFSVGEAKSSRGPGRREIGHGALAERALEPVIPSEEEFPY
TIRVVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVDENNPDRFVTFMD
IQGIEDFFGDMDFKVAGTKDGITAIQVDIKIDGLTEEIIKQAFELTRKGRLYIIDNVLLK
AIPEPRKQMSKYAPKIISTTINPDKIREVIGPGGKMINKIIDETGVKIDINDDGRVYIFS
SDIQAGKRARSMIEAIAKDIEPGQVFLGRVIRVTSFGAFVEFLPGKEGLVHISKLDKKRV
ERVEDIVRVGDQILVKVIEIDKQGRVNLSRKDAMEDEWDK
NT seq 2103 nt   +upstreamnt  +downstreamnt
atgtataaaactttcagcatggagctagccggaagaacacttactattgaaactgggaaa
cttgctcaactggcaaacggttcagtattggtcagatacggtgatactgttgtactctca
acagctaccgcttcggcaacaccaagagagggagtcgatttttttcctttgagtgtggat
tatgaagaaagattgtatgctgtaggaaaaattcccggaggttttataaaaagagaaggt
aaaccgtcggaaaaggcaatacttacagccagagttatagatagacccttaaggcctttg
ttccccaaggacttgaggaatgatgtggctattgtaaatacagttttgtccgttgatcag
gacaattcaccggaacttgccgctttattgggatcctccattgccgtgtcaatttcggac
ataccgtttaacggtcctgtcggagcagttattctggggcttattgacggtgaagtgatt
ataaatccgaccgaaaaacaaagagaaataagccagatgtatgttactttggcaggcaca
aggaataaaattgtcatgatagaggcaggagcaaacgaggttcccgatgaagtcatgctg
gatgccatcaaaaaaggacatgaggaaataaagaaaattgttgactttattgacggaatt
gtaaaggaagtcggcaaacctaaatttgaatatgaatctgcggaagttcccgaggaaata
ttcaatgccgtcagggaatatgcttatgacaagatgagggaagccgtacttgctgtggac
aagcaggtaagagacaaaaacattgatgatcttacaaaagaaataacggagcattttgcg
gaagtgttccctgaaatggaaccagccattaaagaagcaatatacaaactggagaagaaa
gttgtaagggaatatattttggaagagggcagaagagttgacggcagaagacttgacgaa
ataaggcctttgtcggctgaagtcgggctgcttccgagagttcatggttcaggtcttttc
acaaggggacagactcaggtgctttcaagtgttaccttgggcgccatgggggatgttcag
atactggacggtattgacactgaagaaaccaaaagatatatgcatcactataatttccct
ggattcagcgttggcgaagctaagagttcaagaggtccgggaagaagagaaatcggtcac
ggagctctagcggaaagagcattggagcctgtgattccaagtgaagaagaattcccttat
acaataagggtggtatctgaagttcttatgtcaaatggttccacatctcagggaagcgtt
tgcggaagcactctggcacttatggatgcaggtgtgcctatcaaaaagcctgttgcggga
atttctgccggtttggttgttgacgaaaataatcccgacaggtttgttacttttatggat
atccaaggcatagaggatttctttggagatatggactttaaagttgccggaacgaaggat
ggaataacagccattcaggttgatataaagatagacggacttacggaggaaattataaaa
caggcatttgaacttacaagaaaaggtcgtttgtatattattgacaatgtgttgctgaag
gctattccggaaccgagaaaacaaatgtcaaaatatgcgcctaagattatttcaactacc
ataaatccggataaaatcagggaagtaataggccccggaggtaaaatgataaacaagata
attgacgaaaccggagtaaagattgatataaacgacgacggtagagtttatatattcagt
tcggatattcaagccggaaaaagagctcgcagtatgatagaggcaatagcaaaagatatt
gagccaggccaggtatttttgggcagagttatcagagttacatcctttggagcttttgta
gagtttcttccgggaaaagaagggcttgtgcatataagcaagctggacaagaagagagtc
gaaagggttgaagacatagtaagagtcggagatcagatacttgttaaggttatagaaatt
gacaagcagggacgtgtaaatctttcaagaaaggatgcaatggaagatgaatgggataaa
tag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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