KEGG   Clostridium tyrobutyricum: CTK_C15470
Entry
CTK_C15470        CDS       T04331                                 
Symbol
hfq
Name
(GenBank) host factor I protein Hfq
  KO
K03666  host factor-I protein
Organism
ctyk  Clostridium tyrobutyricum
Pathway
ctyk02024  Quorum sensing
ctyk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ctyk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CTK_C15470 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CTK_C15470 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ctyk03019]
    CTK_C15470 (hfq)
   03036 Chromosome and associated proteins [BR:ctyk03036]
    CTK_C15470 (hfq)
Messenger RNA biogenesis [BR:ctyk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CTK_C15470 (hfq)
Chromosome and associated proteins [BR:ctyk03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CTK_C15470 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AND84806
Position
1526591..1526833
AA seq 80 aa
MSKPINNLQDIFLNGARKNRASVIIYLTNGFQIKGNVKGFDNFTVILDSDGKQLMIYKHA
ISTITPLKPILFNNIQDGEV
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagcaagccaataaataatttgcaggatatatttttaaatggagcaagaaaaaataga
gcttcagtaataatatacttgaccaacggttttcaaatcaaaggaaatgtaaagggcttt
gataattttacggttatattggattcggatggcaaacaacttatgatatataaacatgcc
atttcaactattacacctttaaaaccaattttattcaacaacatacaagatggtgaagta
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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