KEGG   Corynebacterium ulcerans 0102: CULC0102_0413
Entry
CULC0102_0413     CDS       T02171                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cue  Corynebacterium ulcerans 0102
Pathway
cue03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cue00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CULC0102_0413 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cue03021]
    CULC0102_0413 (rpoC)
   03400 DNA repair and recombination proteins [BR:cue03400]
    CULC0102_0413 (rpoC)
Enzymes [BR:cue01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CULC0102_0413 (rpoC)
Transcription machinery [BR:cue03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CULC0102_0413 (rpoC)
DNA repair and recombination proteins [BR:cue03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CULC0102_0413 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: BAM26614
Position
436343..440353
AA seq 1336 aa
MIDVNFFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITGVDEEARHSDQTTLEAEMLLEKKDVEADAESEIAERAQKLEED
LAELEAAGAKADARNKVQKAADKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIIDETI
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDAEAEELREIINNGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTMDKTEDEIGGQ
GAYQPATETGPATGVYSSYAEALMARDRGVLGLQAKIQVRISHLRPPTDVEAEQFPEGWE
QGQTWLADTTLGRIMFNELLPWNYPYLEGVMVRKGGGSNKILLGDVINDLAATYPMITVA
QTMDKMKDAGFYWATRSGVTITMSDVLVLPNKEEILDRYEAEAAKIERKYWEQGALTERE
RYDRLVELWKEATDEVGNAVEKLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED
DCGTKQGIRVPLAVEVKDAQGNVTGYTGHSLIETSVAGRVASVDVKDSEGNVLVPAGENL
TDQLIEKLIAAGIAEVKVRSVLTCQTPTGVCAKCYGKSMATGKLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTVHLEDEGNFYTL
TINPDDGSDVVVYEKLSKRQGLATVRVPMESNPGAMIERTLSEGDHVNVGDRLLRGPADP
HDVLEVLGRRGVEQHLVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG
TLVDLSEAKAANAEAIAAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI
NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDGY
GEFTGASVPLDEAYDL
NT seq 4011 nt   +upstreamnt  +downstreamnt
gtgatcgacgtcaacttcttcgacgagctccgcatcggcctggctaccgccgacgacatt
cgtcgttggtccaaaggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
ccggagaaggacggcctcttctgcgagcgaattttcggtccaacccgtgactgggagtgt
gcttgtggtaagtacaagcgcgtccgttacaagggcatcatctgtgagcgctgtggcgtt
gaggtgaccaagtccaaggttcgtcgtgagcgcatgggccacatcgagctggctgcgcct
gtgacccacatttggtacttcaagggcgttccttctcgcctcggctacctattggacctg
gctccaaaggaccttgagcgcatcatctactttgctgccaacatcatcactggtgttgac
gaggaagctcgccacagcgaccagaccactcttgaggcagaaatgcttttggagaagaag
gacgttgaggctgacgcagagtctgagatcgcagagcgcgctcagaagctagaggaagac
cttgccgagctcgaagcagcaggcgcaaaggctgacgctcgcaacaaggtgcaaaaggct
gcagacaaagagatgcagcacatccgcgagcgtgctgagcgtgagatcgaccgtcttgag
gagatctggcagacctttatcaagcttgctcctaagcagatgatcatcgacgagaccatc
tatgaagagctcgttgatcgctacgaggattacttcaccggtggtatgggcgcggaggct
atccaaacccttatccgcaacttcgacctcgacgctgaggcagaagagctgcgcgagatc
atcaataacggcaagggccagaagaagatgcgcgctctcaagcgcctcaaggtcgttgct
gcattccagcgctcgggcaatgacccagctggcatggtgctcgactgcattccggtgatc
ccgccggagctgcgcccgatggttcagcttgatggtggccgttttgctacctccgacttg
aacgatctctaccgtcgcgtgatcaaccgcaacaaccgcctcaagcgcatgatcgatctt
ggtgctcccgagatcatcgtgaacaacgagaagcgcatgctgcaggagtccgtcgacgcg
ctattcgacaacggccgtcgtggtcgccccgtcactggtcctggcaaccgtcctctgaag
tccctgagcgatctgctcaagggtaagcagggtcgtttccgtcagaacctgctgggtaag
cgtgttgactactctggtcgttccgttattatcgttggtccacagctgaagctgcatgag
tgcggtcttcctaagctcatggctcttgagctcttcaagccgtttgttatgaagcgcctc
gtggaaaacgattacgcgcagaacatcaagtcggctaagcgcatggttgagcgtcagcgc
cctgaggtgtgggacgttctggaagaggcaatttccgagcatcctgtgatgcttaaccgt
gcacctaccctgcaccgcctaggtatccaggccttcgagcctaagctcgttgagggtaaa
gctatccagctgcacccgcttgcctgtgaagccttcaacgccgacttcgacggtgaccag
atggctgtgcacttgccgctgtctgctgaggcgcaggctgaggctcgtatcctcatgctt
gcttctaacaacatcctctccccggcatccggtaagccacttgccatgccacgtctggac
atggtgaccggtctttattacctcaccatggacaagactgaggatgagatcggcggacag
ggcgcataccagcctgctaccgaaaccggaccagcaaccggtgtgtactcctcctacgct
gaggctcttatggctcgggaccgtggcgttcttggcctgcaggctaagattcaggtgcgc
attagccacctgcgtcccccgactgatgtcgaggcagaacagttcccagagggctgggag
cagggacagacctggttggctgataccacccttggtcgcatcatgttcaacgagctcttg
ccgtggaactacccataccttgagggcgttatggtccgtaagggtggcggctccaacaag
attctcttgggcgacgtgattaatgacctcgctgcgacctacccgatgattactgtcgcg
cagacgatggacaagatgaaggatgccggtttctactgggcaacccgaagcggcgtgacc
atcaccatgtctgacgtgctcgttcttcctaacaaggaagagatccttgaccgctatgag
gccgaggctgcaaagatcgagcgcaagtactgggagcagggtgctctgaccgagcgcgag
cgctatgaccgtctggttgagctctggaaggaggctaccgacgaggttggtaacgccgtc
gagaagctctatccggacgacaacccgattcctatgatcgtgaagtccggtgctgccggt
aacatgcgtcagatctggaccctggccggtatgaagggcatggttgtgaactcaaagggt
gactacatcacccgcccgatcaagacttccttccgtgaaggcctgtcggttcttgagtac
ttcaacaactctcacggttcgcgtaagggccttgccgataccgctttgcgtaccgctgac
tcgggttacctcacccgtcgtctggtggacgtcgcgcaggacgttatcgtccgcgaggac
gactgtggcaccaagcagggcattcgtgtcccattggctgtcgaggttaaggatgctcag
ggcaacgtcaccggttacaccggacacagcctcatcgagacctctgtcgctggccgtgtg
gcttccgtcgacgtcaaggattctgaaggcaacgtcttggtgccggctggtgaaaacctc
accgaccagctcatcgagaagctcatcgctgcgggtatcgcagaggtcaaggttcgctcc
gtgcttacctgccagactccgaccggcgtgtgcgctaagtgctatggcaagtccatggct
accggcaagctcgttgatatcggagaagcagtgggtattgtcgctgctcagtccattggt
gagcctggtacccagctgacaatgcgtacgttccaccagggtggtgtcggtggcgacatt
accggtggtctgcctcgtgttcaggagctcttcgaggctcgtgttcctaagaaccgtgct
ccgattgcttctgttgcaggtaccgtccaccttgaggatgaaggcaacttctacaccctc
accatcaacccagatgatgggtctgatgttgtggtctacgagaagctttctaagcgtcag
ggtctggctaccgttcgggttcctatggagtccaaccccggtgccatgatcgagcgcacc
ttgtcagagggcgaccacgtgaatgtgggcgatcgtctgctgcgtggtcctgctgatccg
catgacgtacttgaggttcttggccgccgtggtgttgagcagcacctcgtcgacgaggtt
caggacgtttaccgtgcacagggtgtggctatccacgataagcacatcgagatcatcatc
cgtcagatgctgcgtcgtggaaccgtcatcgagtccggatcgactgagttcctcccaggt
actctcgttgatctttcggaggctaaggccgctaacgccgaggctattgccgctggtggt
cagcctgctgagctccgttcagagatcatgggtatcaccaaggcatcgctggctaccgag
tcgtggctgtccgccgcgtccttccaggagaccacacgcgtgcttaccgacgccgccatc
aacaagcggtccgataagctgattggcctcaaggagaacgtgatcatcggtaagctgatc
ccggccggtaccggtatttcccgttaccgcaacatctccgttaagccgactgaggcagcc
cgcaatgcggcttactcaatcccgacttatggagactccatctatggcgatgatggctac
ggtgagttcaccggtgcctccgtgccactggatgaggcctacgacctctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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