KEGG   Cupriavidus necator NH9: BJN34_18710
Entry
BJN34_18710       CDS       T05121                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cuh  Cupriavidus necator NH9
Pathway
cuh03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cuh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BJN34_18710
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cuh03021]
    BJN34_18710
   03400 DNA repair and recombination proteins [BR:cuh03400]
    BJN34_18710
Enzymes [BR:cuh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BJN34_18710
Transcription machinery [BR:cuh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BJN34_18710
DNA repair and recombination proteins [BR:cuh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BJN34_18710
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Apocytochr_F_C Peptidase_M23 DUF6744
Other DBs
NCBI-ProteinID: AQV95915
UniProt: A0A1U9UUT0
Position
1:complement(4036897..4041141)
AA seq 1414 aa
MKALLDLFKQVQQEEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVLEPGMTPLKKSQIMSEDDYLAKCDEYGEGEFVAM
MGAEGIRELLRGIDIEKQIEQIRAELQATGSEAKIKKFAKRLKVLEAFQRSGIKPEWMIL
EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
TLKLHQCGLPKLMALELFKPFIFHKLETMGIATTIKAAKKEVESQTPVVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLFPANGDPSIVPSQDVVLGLYYTTRDKINGRGEGMTFADISEVIRAYEN
KEVELASRVNVRITEYELVDKDAEGDARFAPKITLQATTVGRAILSEILPKGLPFSVLNK
PLKKKEISRLINTAFRKCGLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPQKEKII
AEASAKVKEYDKQYMSGLVTDQERYNNVVDIWGAAGDQVGKAMMEQLQHEDVVDREGKTV
KQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI
STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTTNGVAMKALVEGGEVIEA
LRDRILGRVTVADVVNPETQETAIEAGTLLDEDLVEMIDAIGVDEVKVRTPLSCDTRYGL
CGKCYGRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKA
TGTVRFTVTMRYVTNAKGELIVISRSGEALITDDHGRERERHKIPYGATLLVQDGQAIKA
GTQLATWDALTRPIVSEYTGTTKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRRTAATKG
IRPQVKLLDAAGQEVKIPGTDHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAAVLAEVTGTTSFGKDTKGKQRLVITDLDGNAHEFLIAKEK
QVLVHDGQVVNKGEMIVEGPADPHDILRLKGIEELAHYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIADVGDTKFIPGEQVERSELLDENDRVIAEGKRPATYENLLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGLAYHRARKAREA
SERERAQAIAEEEQSLFIEPAPVVQATEGEGDNV
NT seq 4245 nt   +upstreamnt  +downstreamnt
atgaaagcattgctcgatctctttaagcaggtacagcaggaagagcagttcgacgcgatc
aagatcggcctggcctcgcccgagaagatccgttcgtggtcgtacggcgaagtcaagaag
ccggaaacgatcaactaccgtacgttcaagccggaacgcgacggcctgttctgcgccaag
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgaactggccgcgccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgcctgggcatggtcctggacatgacgctgcgcgacatcgagcgcgtgctgtac
tttgaagcattcgtggtgctcgaacccggcatgaccccgctcaagaagagccagatcatg
tccgaagacgactacctcgcgaagtgcgacgagtacggcgagggcgagttcgtcgccatg
atgggtgccgagggcatccgtgaactgctgcgcggcatcgacatcgagaagcagatcgaa
cagatccgcgccgagctgcaggccaccggttccgaagccaagatcaagaagttcgccaag
cgcctgaaggtgctcgaggccttccagcgttcgggcatcaagcccgagtggatgatcctc
gaagtgctgccggtgctgccgcccgagctgcgtccgctggtgccgctggacggcggccgc
tttgcgacctcggacctgaacgacctgtatcgccgcgtcatcaaccgtaacaaccgtctg
aagcgcctgctggagctgaaggcgcctgagatcatcgtgcgcaacgaaaagcgcatgctg
caggaagcggttgactcgctgctggacaacggccgtcgcggcaaggcgatgaccggtgcc
aacaagcgtccgctgaagtccctggccgaaatgatcaagggcaagggcggccgtttccgt
cagaacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccg
acgctcaagctgcaccagtgcggcctgcccaagctgatggcgctcgagctgttcaagccg
ttcatcttccacaagctggaaacgatgggcatcgccaccaccatcaaggcggcgaagaag
gaagtcgaaagccagaccccggtggtgtgggacatccttgaagaggtgatccgcgagcac
ccggtgatgctgaaccgtgcgccgacgctgcaccgcctgggtatccaggcgttcgagccg
gtgctgatcgaaggcaaggccatccagttgcacccgctggtctgcgcggcgttcaacgcc
gacttcgacggtgaccagatggctgtccacgtcccgctgtcgctggaagcgcagatggaa
gcccgcaccctgatgctggcctccaacaacgtgttgttcccggccaacggcgacccgtcg
atcgtgccgtcgcaagacgtggtgctgggcctgtactacacgacccgcgacaagatcaac
ggccgcggcgagggcatgacctttgccgacatcagcgaagtgatccgcgcctacgagaac
aaggaagtcgaactggcttcgcgcgtgaacgtgcgtatcaccgagtatgagctggtcgac
aaggacgccgaaggcgatgcccgtttcgcacccaagatcacgctgcaggccaccacggtc
ggccgcgcgatcctgtccgagatcctgcccaagggcctgccgttctcggtgctgaacaag
ccgctgaagaagaaggaaatctcgcgcctgatcaacaccgcgttccgcaagtgcggcctg
cgcgagaccgtgatcttcgccgacaagctgctgcagtcgggcttccgcctggctacccgc
gctggtatctcgatcgccatcgacgacatgctggtgccgccgcagaaggaaaagatcatc
gccgaggcttcggccaaggtgaaggaatacgacaagcagtacatgtcgggtctggtgacc
gaccaggaacgctacaacaacgtcgtggacatctggggcgccgccggcgaccaggtgggc
aaggcgatgatggagcagctccagcacgaagacgtggtcgaccgcgaaggcaagaccgtg
aagcaagagtcgttcaactccatctacatgatggccgactcgggcgcacggggctcggcc
gcgcagatccgccagctggccggtatgcgtggcctgatggccaagccggatggctcgatc
attgaaacgccgattacggcgaacttccgtgaaggcctgaacgttctgcagtacttcatc
tcgacccacggcgcccgtaagggcctggccgatacggcactgaagaccgcgaactcgggt
tacctgacccgtcgtctggtcgacgtgacgcaggatctggtcgtggtcgaagacgattgc
ggcaccaccaacggcgtggccatgaaggccctggtcgaaggcggtgaagtgatcgaagcc
ctgcgcgaccgtatcctcggccgcgtgaccgtggccgacgtggtgaacccggaaacccag
gaaaccgcgatcgaagccggcacgctgctggacgaagacctggtcgagatgatcgacgcg
atcggcgtggacgaagtcaaggtccgcaccccgctgtcgtgcgacacgcgctacggcctg
tgcggcaagtgctacggccgcgacctgggccgcggcgtgctggtgaactccggcgaagcg
gtgggcgtgattgccgcgcagtcgatcggtgagccgggcacgcagctgaccatgcgtacg
ttccacatcggtggtgcggcatcgcgtgcggcagtggcatcgagcgtggaggccaaggca
accggtaccgtgcgtttcacggtgaccatgcgttacgtgaccaatgcgaagggcgaactg
atcgtcatctcgcgttcgggcgaggcgctgatcaccgacgaccacggccgcgagcgcgag
cgccacaagatcccgtacggcgccacactgctggtgcaggacggccaggccatcaaggct
ggcacgcagctggccacgtgggacgcgctgacccgcccgatcgtttcggaatacaccggt
acgaccaagttcgagaacgtcgaagaaggcgtgaccgtcgccaagcagatggacgaagtg
acgggcctgtcgaccctggtggtgatcgacgccaagcgccgcacggccgccaccaagggc
atccgcccgcaggtgaagctgctcgacgccgccggccaggaagtgaagatcccgggcacg
gaccactccgtgaccatcggcttccaggtcggcgcgctgatcacggtgaaggacggccag
caggtgcacgtgggtgaagtgctcgcgcgtatcccgaccgaatcgcagaagacccgcgac
attaccggtggtctgccgcgtgtggccgagctgttcgaagcgcgttcgccgaaggatgcc
gccgtgctggcggaagtcaccggcacgacctcgttcggcaaggacaccaagggcaagcag
cgcctggtcatcaccgacctggacggcaatgcccacgagttcctgatcgcgaaggaaaag
caggtgctggtgcacgacggccaggtggtgaacaagggcgaaatgatcgtggaaggtccg
gcggacccgcacgacatcctgcgcctgaagggcatcgaagagctggcgcactacatcgtg
gacgaagtccaggacgtgtaccgtctgcaaggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcgccgcgtccagatcgccgacgtgggcgacaccaagttc
atcccgggtgaacaggtggagcgttcggaactgctcgacgagaacgaccgcgtgatcgcc
gaaggcaagcgtccggccacgtacgagaacctgctgctcggtatcaccaaggcgtcgctg
tcgaccgacagcttcatctcggcggcatcgttccaggaaaccacgcgcgtgctgaccgaa
gccgcgatcatgggcaagaccgacgacctgcgtggtctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggtaccggcctggcctaccaccgcgcccgcaaggcgcgcgaggcc
tccgagcgcgaacgcgcccaggcgatcgccgaagaagagcagtcgctcttcatcgagccg
gcgccggtggtgcaggcgaccgagggtgaaggcgacaacgtctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system