KEGG   Cronobacter universalis: AFK65_14185
Entry
AFK65_14185       CDS       T04063                                 
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cui  Cronobacter universalis
Pathway
cui03030  DNA replication
cui03410  Base excision repair
cui03420  Nucleotide excision repair
cui03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cui00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AFK65_14185 (ligA)
   03410 Base excision repair
    AFK65_14185 (ligA)
   03420 Nucleotide excision repair
    AFK65_14185 (ligA)
   03430 Mismatch repair
    AFK65_14185 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cui03032]
    AFK65_14185 (ligA)
   03400 DNA repair and recombination proteins [BR:cui03400]
    AFK65_14185 (ligA)
Enzymes [BR:cui01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AFK65_14185 (ligA)
DNA replication proteins [BR:cui03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AFK65_14185 (ligA)
DNA repair and recombination proteins [BR:cui03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AFK65_14185 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AFK65_14185 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     AFK65_14185 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AFK65_14185 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH 5_3_exonuc DZR_2
Other DBs
NCBI-ProteinID: ALB55752
UniProt: A0A376EPJ0
Position
complement(3058629..3060647)
AA seq 672 aa
MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELVTPDSPTQ
RVGAAPLTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRLKSTDALVYCCELKLDGLA
VSLLYENGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGELPRSHM
DRLQQFKAWGLPVSDRIRLVKTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSLELQEQL
GFVARAPRWAVAFKFPAQEQLTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVLSERPQETRPVVFPAQCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNLVAALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALIN
ASIDDLQKVPDVGIVVATHVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFA
GKTVVLTGSLSQMSRDDAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEV
IDEAEMLRLLGE
NT seq 2019 nt   +upstreamnt  +downstreamnt
atggaatcaatcgaagaaaaactgactcaactgcgaaccacgcttcgccatcatgaattt
ctctaccatgttatggacgcgccggaagtgccggacgccgaatatgatcgtctgatgcgc
gaactgcgcgcgctggaagaggcgcatccggagctggtcacgcccgattcgcccacccag
cgcgttggcgccgcgccgctgaccgagttcagccaggtgcggcatgaagtgccgatgctt
tcgctggataacgtgtttgacgaggcgagtttcctggcgttcaacaagcgcgtgcaggac
cgtctgaaaagcaccgatgcgctggtgtactgctgcgagctgaaactcgatggcctcgcg
gtcagcctgctctatgaaaatgggctgctggtacgcgccgccacccgtggcgacggcacc
accggcgaagacatcacgcttaacgtgcgcaccattcgcgccattcctctgaagctgcat
ggcgataacattccggcgcgcctcgaagtgcgcggcgaagtgttcctgccgcaggcgggc
tttgaaaaaattaatgaagaagcccggcgtaccggcggtaaagttttcgctaacccgcgt
aacgcggcagcaggatcgctgcgtcagctcgatccgcgcgtcacggccaaacgcccgctg
accttcttctgttacggcgtcgggctgctggaaggcggcgagctgccgcgcagccatatg
gatcgtctgcaacagtttaaagcctggggcctgccggtgagcgatcgcattcgcctcgtg
aaaacgccggaagaagtgctggcgttttaccaccaggtcgaggccgacaggccgacgctc
gggtttgacatcgacggcgtggtaattaaagtcgattcgcttgagcttcaggaacagctg
ggcttcgtggcgcgggcgccgcgctgggccgtggcgtttaaattcccggcccaggagcaa
ctgacgaccgtgcgcgacgtggagttccaggtcggacgtaccggggctatcacgccggtg
gcgcgtcttgagccggtacaggtggcgggggtgctggtgagcaacgcgacgctgcataac
gccgatgagatagcccgccttgggttgcgtatcggcgataaagtggtgattcgccgcgcg
ggggatgttattccgcaggtggtcaacgtggtgctctctgagcgcccgcaagagacgcgg
ccggtcgtgtttccggcgcagtgtccggtctgcggctcggacgtcgagcgcgtagagggc
gaggcggtgacgcgctgcaccggcgggcttatctgcggcgcgcagcgtaaagaggcgctt
aagcatttcgtctcgcgccgcgcgatggatgtggacggcatgggcgataaaatcatcgat
cagctggttgagaaagaatatgtccatacgcctgccgatctgttccgtctgaccgcgggc
aaactgaccgggctcgaccgcatggggccgaaatcggcgcaaaatctggtcgctgcgctg
gagaaagccaaagagaccacgttcgcgcgtttcctgtatgcccttggcatcagggaagtg
ggcgaagcgaccgccgccgggctcgcggcgcatttcggcacgctggaggcgctgattaac
gcctcgatcgacgacctgcaaaaagtgccggatgtcggcatcgtggtcgcgacgcatgtg
ttcaacttctttgaagaagagagcaaccgcgccgtcattcgcgatctcaccgaagaagta
ggcattcactggcctgcgccgcaggtggtgaaagccgaagagatagacagcccgttcgcc
gggaaaaccgtggtgctgaccggctcgttaagccagatgtcgcgcgacgacgctaaagcg
cgcctcgcggcgctgggggcgaaggtcagcggcagcgtgtcgaagaaaaccgatctgctt
atcgccggtgaagcggccggctccaagcttgcgaaagcgcaggagctgggcattgaggtg
atcgacgaggcggaaatgctgcgcctgctgggtgagtaa

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