KEGG   Curtobacterium sp. MR_MD2014: NI26_03405
Entry
NI26_03405        CDS       T04180                                 
Name
(GenBank) cold-shock protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
cum  Curtobacterium sp. MR_MD2014
Pathway
cum03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NI26_03405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cum03019]
    NI26_03405
   03009 Ribosome biogenesis [BR:cum03009]
    NI26_03405
Messenger RNA biogenesis [BR:cum03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     NI26_03405
Ribosome biogenesis [BR:cum03009]
 Prokaryotic type
  rRNA helicases
   NI26_03405
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 HEM4 adh_short UvrA_inter
Other DBs
NCBI-ProteinID: AIV39524
UniProt: A0A0N6ZXF1
Position
710178..711998
AA seq 606 aa
MSTDTATATETADEGPVVTFADLGLSDPVLKAVKDIGYETPSAIQEATIPTLLEGRDVVG
LAQTGTGKTAAFALPILSRMESGSKVPQALVLSPTRELALQVCEAFEQFASHMKHVHVLP
VYGGQAYGVQLSALRRGVDVVVGTPGRIMDHIAKGTLDLSQLKYLVLDEADEMLKMGFAE
DVETILAETPDDKQVALFSATMPAQIRRISQQYLNDPSEITVKTKTKTAANITQRYLMVS
YPQKVDALTRILEVEDFEGMIIFVRTKSETETLAEKLRARGYAAAAISGDVAQAQRERTV
NQLKSGKLDILVATDVAARGLDVDRITHVVNFDIPVDIESYVHRIGRTGRAGRKGDSISF
VTPRERRLLSAIERHTKQPLTQMQLPTVEDVNETRLSRFDDAITAALEQQDRIEKFRDVI
AHYVRNHDVPAEDVSAALAVVAQGDSPLLLDPADDQLRNQVDRDGRRGERRDRDDDRGGR
EDRGPRRSQPMTAYRIEVGRRHRVEPRQIVGALANEGGLRRDDFGAIQIRPDFSIVELPE
SMDPGVLDRLADTRISGKLIEIAPDRRGGARRYDRDDRGPRAPRRDDRPRRDDRRDDDRP
ARKPRH
NT seq 1821 nt   +upstreamnt  +downstreamnt
atgagcacggacaccgccaccgccaccgagaccgccgacgaggggcccgtggtgaccttc
gccgacctcggcctgagcgatccggtgctcaaggccgtcaaggacatcggctacgagacc
ccctccgccatccaggaagcgacgatcccgacgctgctcgaggggcgcgacgtcgtcggc
ctcgcgcagaccggcaccggcaagaccgcggcgttcgcgctgccgatcctgtcccgcatg
gagtcgggcagcaaggtgccccaggccctcgtgctgtcgccgacccgtgagctcgcgctg
caggtgtgcgaggcgttcgagcagttcgcgtcgcacatgaagcacgtgcacgtcctgccc
gtctacggcggccaggcgtacggcgtgcagctgtccgcgctgcgccgtggcgtcgacgtc
gtcgtcggcacgcccggtcgcatcatggaccacatcgccaagggcacgctcgacctgtcc
cagctgaagtacctcgtgctcgacgaggccgacgagatgctcaagatgggcttcgccgag
gacgtcgagacgatcctggccgagacgccggacgacaagcaggtcgcgctgttctcggcg
acgatgcccgcgcagatccgtcgcatctcgcagcagtacctgaacgacccgtccgagatc
accgtcaagaccaagacgaagaccgccgcgaacatcacgcagcgctacctgatggtgtcg
tacccgcagaaggtcgacgcgctcacccgcatcctcgaggtcgaggacttcgagggcatg
atcatcttcgtccgcacgaagagcgagaccgagaccctggccgagaagctccgcgcccgc
gggtacgccgcggcggcgatcagcggtgacgtcgcccaggcacagcgcgagcgcacggtc
aaccagctgaagtccggcaagctcgacatcctggtcgccacggacgtcgccgcccgtggc
ctcgacgtcgaccgcatcacccacgtcgtgaacttcgacatccccgtcgacatcgagtcc
tacgtgcaccgcatcggccgcaccggtcgcgcgggccgcaagggtgactcgatcagcttc
gtcacgccgcgcgagcgccggctcctgtcggccatcgagcgccacacgaagcagccgctc
acgcagatgcagctgcccacggtcgaggacgtcaacgagacgcgcctcagccggttcgac
gacgcgatcaccgcggcgctcgagcagcaggaccgcatcgagaagttccgtgacgtcatc
gcgcactacgtccgcaaccacgacgtgcccgccgaggacgtctcggccgcgctcgcggtc
gtggcgcagggtgactcgccgctgctgctcgacccggccgacgaccagctccgcaaccag
gtggaccgcgacggccgccgtggtgagcgccgcgaccgtgacgacgaccgtggtggccgc
gaggaccgtgggccgcgccgctcgcagccgatgaccgcctaccggatcgaggtcgggcgt
cgccaccgcgtcgagccgcgccagatcgtcggcgccctggcgaacgagggcggcctgcgg
cgcgacgacttcggcgcgatccagatccgacccgacttctcgatcgtcgagctgcccgag
agcatggacccgggcgtgctcgaccggctcgccgacacccggatcagcgggaagctcatc
gagatcgcgccggaccgccgcggcggtgcccgtcggtacgaccgcgacgaccgcggaccg
cgtgcgccccgtcgggacgaccgtccccgccgtgacgaccgccgcgacgacgaccgtccg
gcacgcaagccccggcactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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