KEGG   Cupriavidus malaysiensis: BKK80_03655
Entry
BKK80_03655       CDS       T04978                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
cup  Cupriavidus malaysiensis
Pathway
cup02020  Two-component system
cup02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cup00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BKK80_03655
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    BKK80_03655
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cup03021]
    BKK80_03655
Transcription machinery [BR:cup03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BKK80_03655
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_38 HTH_IclR HTH_23
Other DBs
NCBI-ProteinID: AOZ05019
Position
1:complement(836735..838210)
AA seq 491 aa
MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALIENPLLERENDWIESPLRV
AADGSINVQSAPAPAPAEAQGNGEARSDEGGGDEERFGDGADDYGSDWSLDDFARRPQGD
EDEKAPLQLRDAEPTLREHLMEQLAPLKISARDKGLAIFLIESLDDDGYLSATLEEICEE
LPEELEFEIEEVQAMLALLQSFDPPGVGARNAAECLALQLRRLSHPQRELALGIVNHHLE
LLAARDYTRLKKALQVDETALKAAHDLIRSLAPYPGHAYNRPQADFVVPDVFVRKSGSGW
IAQLNPDVMPRLRINDMYAQILRGAKGESGAAGLQQKLQEARWLIKNIQQRFDTILRVAQ
AIVERQKNFFSHGEIAMRPLVLREIADTLGLHESTISRVTTNKYMATPMGTFELKYFFGS
HVSTETGGAASSTAIRALIKQLIGAEDPKNPLSDSRIAELLGDQGFVVARRTVAKYREAL
KIPAVNLRKSL
NT seq 1476 nt   +upstreamnt  +downstreamnt
atgaaaccttcgcttcagctccgcctttcccagcatctcgcactgacgccacagcttcag
cagtcgatccggctgttgcagctttccacgctcgaactgcagcaggaagtcgagcaggcc
ctgatcgaaaaccctctgctcgagcgcgaaaacgattggatcgagagcccgctgcgggtg
gccgccgatggcagcatcaacgtgcagagcgcacccgcgccggccccggccgaagcgcag
ggcaatggcgaggcacgcagcgacgagggcggcggcgatgaagagcgcttcggcgacggc
gccgacgactacggcagcgactggagcctggacgacttcgcgcgtcgcccccagggcgac
gaagacgagaaggcgccgctgcaactgcgcgacgccgagccgaccctgcgcgagcacctg
atggaacagctcgcgccgctgaagatctcggcgcgcgacaagggcctggccatcttcctg
atcgagtcgctcgacgacgacggctacctcagcgccacgctcgaggagatctgcgaagag
ctgcccgaagagctggagttcgagatcgaggaagtgcaggccatgctggccctgctgcag
agcttcgatccacccggcgtgggagcgcgcaatgcggccgaatgcctggcgctgcagctg
cggcggctgtcgcatccgcagcgcgagctggcgctgggcatcgtcaaccaccacctggaa
ctgctggccgcgcgcgattacacgcgcttgaagaaggcgctgcaggtggacgagacggcg
ctgaaggcagcacatgacctgatccgctcgctggcaccgtatccgggccacgcctacaac
cgtccgcaggccgacttcgtcgtgcccgacgtgttcgtgcgcaagagcggcagcggctgg
atcgcccaactcaatcccgacgtgatgccgcgcctgcgcatcaacgacatgtacgcgcag
atcctgcgcggcgccaagggcgaatccggtgccgccggcctgcagcagaaactgcaggaa
gcccgctggctgatcaagaacatccagcagcgcttcgacaccatcctgcgtgtcgcacag
gccattgtcgagcgtcaaaagaacttcttcagccacggtgaaattgcgatgcgccccttg
gttttgcgggagattgccgatacactgggattacacgagtcaaccatctctcgggtgacg
actaacaaatacatggccacccccatgggcactttcgagctgaagtacttcttcggcagc
catgtgtccacggaaacgggcggcgctgcttcatcaacggctatccgagccttgatcaag
caactgataggagccgaagacccgaagaatcccctgtccgacagccgaattgccgaattg
ctgggcgatcagggcttcgtcgtggcgcgccggacggtcgccaagtaccgagaagcgctg
aagatcccggcagtcaatctccgcaagtctttgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system