KEGG   Corynebacterium ureicelerivorans: CUREI_04560
Entry
CUREI_04560       CDS       T03241                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cuv  Corynebacterium ureicelerivorans
Brite
KEGG Orthology (KO) [BR:cuv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CUREI_04560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cuv03400]
    CUREI_04560
Enzymes [BR:cuv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CUREI_04560
DNA repair and recombination proteins [BR:cuv03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CUREI_04560
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AIL96661
UniProt: A0A077HJK5
Position
867392..869668
AA seq 758 aa
MANDQKVRVGGRELTVSNLDKVLYPATGTTKADVMRYYQAVAEVLIPQARRRPVTRKRWP
EGVEKQSFFRKDLEDSAPEWIATGTIQHTTSVNAYPLIDGSATLAWLAQVAALELHTPQW
RFGEDGAPRNPDRLVLDLDPGPGVELRDTAEVALWCREILEDMGLTCVPVTSGSKGIHLY
AGLDGASEADAVSKVAKTLAQHLERTHPDRVTADMSKARRKGKVFLDWSQNNGKKTTICP
YSLRGRQQPTVAAPRTWDEIEDPKLRQLEFEEVMERVTDGLDPMADLGTHRDDKLATYRS
MRDKRKTGEPVPDAAPQPREGEPIFVIGEHDASHLHWDFRLEHDGVLVSWAVPKGPPLET
DKNRLAVQTEDHPIEYAEFEGTIPKGQYGAGTVKIWDIGTCEVEKWRANEIIVVLHGRGD
GGLGGIPRRYALIRTEGKNWLLKLMRDQPLPARPLAPMLPTMATRGDITLDQHEGATFAF
EMKWDGYRILADVGRDVRLVSRGGKDYTRLFPHASELSQMLADGGCVDGELVALGPDGRP
DFSLLHNADRDGAHAHLRYMVFDLLRLGGRDLTAEPWSTRRELLGHMGDTEHVVVPPAYT
GSFDHAWRAAEELGLEGVVAKRTDSAYAPGERSSAWLKVKRALHQEVVVVGVRTGKRDIA
SLLVAVPDDEGELRYAGRVGTGFSNAQLADIGAKLRRIQRATPPVDVPAEDARDAWWVIP
EYVAEVQLAGATAEKKVRQASWRGWRDEKDPSEVRWEV
NT seq 2277 nt   +upstreamnt  +downstreamnt
atggcgaacgaccagaaggtccgcgtcggcggccgcgagctcaccgtgagtaacctcgat
aaggtgctttacccggccacgggcacgaccaaggccgacgtgatgcggtactaccaggcc
gtcgccgaggtgctcatcccacaggcgaggcggcggccggtgaccaggaagcggtggccc
gaaggcgtcgagaagcaaagcttcttccgcaaagacctcgaagattccgcgcccgagtgg
atagccaccggcaccatccagcacaccacgagcgtcaacgcgtacccgcttatcgacggc
tccgccaccctcgcctggctggcccaagttgccgccctcgagctgcacaccccgcagtgg
cgcttcggcgaggacggggcaccccgcaacccggaccggctggtgctggacttagacccc
gggcccggcgtggagctgcgtgacaccgccgaggtggccctgtggtgccgcgagatcctc
gaggacatggggctgacctgcgtcccggtgacgtccgggtccaagggcatccacctctac
gcgggcctagacggggcaagcgaagcggacgccgtgtccaaggtggccaagacgctggcg
cagcatctcgagcgcacccacccagaccgggtgaccgccgacatgtcgaaggcgcggcgc
aaaggaaaggtctttttggactggagccaaaacaacgggaagaagaccaccatctgcccg
tactcgctgcgggggcggcagcagcccaccgtcgccgcgccgcggacgtgggacgaaatt
gaagacccgaagctgcgccagctcgagttcgaggaggtcatggaacgggtcacagatggg
ctcgatccgatggcggaccttggcacccaccgggacgacaagctggccacgtaccgctcc
atgcgcgacaagcgcaagaccggcgagccggtgccggacgccgcgccgcagccacgcgag
ggcgaacccatcttcgtcatcggcgagcacgacgcctcgcacctgcactgggatttccgg
ctggagcacgacggcgtgctcgtctcctgggccgtaccgaagggcccgccgctcgagacc
gacaagaaccgcctcgccgtgcagaccgaggaccacccgattgagtacgccgaattcgaa
ggcaccatcccaaagggccagtacggcgccggcacggtgaaaatctgggacatcggcacg
tgcgaggttgaaaagtggcgcgcaaacgagatcatcgtcgtactgcacggccgcggcgac
gggggcttgggcggcatcccgcgccgctacgcgctcattcgcaccgagggaaagaactgg
ctgctcaagctcatgcgcgaccagcctttgcccgcgcgcccgcttgctcccatgcttccc
accatggccacccgcggcgacatcacgctcgaccaacacgagggcgccacgttcgcgttc
gagatgaagtgggacggctaccggatcctcgcggacgtcggccgcgacgtccgtttagtc
agccgcggcggcaaggactacacccgcctcttcccgcacgcgagcgagctttcgcagatg
cttgccgacggcggctgcgtcgacggcgagttggtcgccctcgggcccgacggacgtccc
gacttttcgctgctgcacaacgccgaccgcgacggcgcgcacgcgcacctgcggtacatg
gtcttcgatctcctccgcctggggggccgcgacctgaccgcggagccgtggtccacccgg
cgcgagttgctgggccacatgggcgacaccgagcacgtggttgtcccacccgcgtacacc
ggcagcttcgaccacgcgtggcgcgccgccgaagagctggggctggagggagtggtggcc
aaacgcaccgactcggcgtacgcgccgggggagcgcagcagcgcgtggttgaaggttaaa
cgggcactgcaccaagaggtggtggttgtcggcgtgcgcacgggcaagcgcgacatcgca
tccctgctcgtcgcggtgccggacgacgaaggcgagctgcgctacgccggccgcgtgggt
acgggcttttccaacgcgcagctcgccgacattggggcgaagctgcgccgcattcagcgc
gcgacaccaccggtggacgtgcctgccgaggatgcgcgcgatgcttggtgggttataccg
gagtacgtggcggaagtgcagctcgcaggggccaccgcggagaaaaaagtgcgccaggcc
tcgtggcgaggctggcgcgatgagaaagatcccagcgaggtgcgttgggaggtctag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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