KEGG   Campylobacter upsaliensis: CUP3940_1051
Entry
CUP3940_1051      CDS       T06758                                 
Symbol
hsdR3
Name
(GenBank) type I restriction/modification system, restriction subunit
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
cux  Campylobacter upsaliensis
Brite
KEGG Orthology (KO) [BR:cux00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:cux02048]
    CUP3940_1051 (hsdR3)
Enzymes [BR:cux01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     CUP3940_1051 (hsdR3)
Prokaryotic defense system [BR:cux02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   CUP3940_1051 (hsdR3)
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N ResIII DEAD
Other DBs
NCBI-ProteinID: QKF88001
Position
complement(1039806..1042733)
AA seq 975 aa
MTNYTEKNLESFIEAHLLESGYIKRESKDYDKSLGVDRELFLNFLHSTQAKTLQELEIRG
IKEQELLKRIFSQIQDKGIVKALQAGVKIRDITIKLAHPKPNSSANPQALENYEKNIFSI
TRQLYFSEKNNKSLDMVIFLNGLPLITMELKNPFTGQNVYNAIEQYKKDRDPRESIFKQS
VVHFALDCDLIYMSTKLEGIQTKFLPFNRGLNNGSGAIGLECGGGNPAVKDKMKTSYFWE
ELLQKDTLSKLLFDFTIKNSKGVIFPRFHQFDVVSRLLKDVKEKGVGQRYLIQHSAGSGK
SNSIAWLTHNLVSLHRIENNKEKEVFDSILVVTDRRVLDRQIQENVKSFTQDKNLVESIT
EGSRQLKAALEEGKKIIVTTIQKFPYIADEITHLQNKSFAIIIDEAHSSQSGKNAEEMGK
AISNKNDKEMGEMDLEEELIKIIKNKKFQKNASYFAFTATPKPKTLEMFGSACEINGEKK
FIPFHLYSMKQAIEEGFILDVLKGYITYASYYKIVSKNDNREYDKKKANAKLKAYVTNHI
ATIEKKATIMIEHFFQNICKKIGEKAKAMIVTSSRENAVKYYLFFREYLQKNHPEYQALV
AFSGDKEINGESYSEVRLNGFSEAMLKDEFKKDNYRFLIVAEKYQTGFDEPLLHTMYVDK
RLEGISAVQTLSRLNRICKNKEDTCVLDFVNTHEEIGKSFSTFYGQTYLKEPTNIDNIYT
LKSELFDYGIYTQDELNSFIEAIRKEQDENKIHSKLDNMIKEYNAKSDDEKTKFYTKAKV
YLREYSFLAQILPFNDIELEKLSILLKMLIAKIVPPRTEDLAKGILNNVDLNSIRIILDS
KKDISLSSNGELSPAGADDSSKKEVELERLSNIVREFNTKFGSVDFGTNEKIAKELMDLK
DDITKEQTFRDSLGDEQNARRLFADIFKIQYLQFFKRNKDFFTQLDNKEEFKERVSNVIY
EMIDEGYQYNAFKSF
NT seq 2928 nt   +upstreamnt  +downstreamnt
atgactaactacacagaaaaaaatttagaaagctttatagaagctcatttattagaaagt
ggttatatcaaaagagaaagtaaagattatgataaaagcttaggtgtagatagggagcta
tttttaaattttttacactccactcaagctaaaactttgcaagaattagaaataagaggc
ataaaagagcaagaattattaaagcgcattttttcacaaatacaagataaaggaattgta
aaagccctgcaagctggcgtaaaaataagggacattacaatcaaactagcacaccctaag
ccaaattctagtgctaatccacaagccctagaaaattatgagaaaaatattttttctatc
actagacagctttattttagtgaaaaaaataataagtctttagatatggtgattttctta
aatggactgccgcttatcactatggagcttaagaaccctttcacaggtcaaaatgtctat
aatgccatagaacaatacaaaaaagatagagaccctagagagagtatatttaagcaaagt
gtggtgcattttgccctagattgtgatttaatttatatgagcacaaagctagagggaata
cagacaaaattcctgccctttaaccgtgggctaaataatggcagtggggcgatagggctt
gagtgtggtggaggcaatcctgcggtaaaagataagatgaaaacgagctatttttgggag
gagcttttacaaaaggatactttaagcaaactgctttttgattttacgataaaaaattct
aaaggggtgattttccctagatttcatcaatttgatgtcgtaagtaggcttttaaaagat
gtaaaagaaaaaggtgtggggcaaaggtatctcatacaacatagtgcaggaagtgggaaa
agcaactccatagcgtggctaacgcataatctagtaagtttgcatagaatagaaaataat
aaagaaaaagaggtttttgatagcattttagtcgtaacggatagaagggtgcttgataga
cagatacaagaaaatgtcaagtcttttacacaagataaaaacctagtagaatctatcaca
gagggaagtaggcagctaaaagccgccctagaagagggtaaaaaaatcatcgttacaacc
atacaaaaattcccctatatcgccgatgaaatcacgcatttacagaataaaagctttgct
attatcatcgatgaagcacattcaagccaaagtggtaaaaacgcagaagaaatgggaaaa
gccataagtaataaaaatgataaagaaatgggcgaaatggacttagaagaagagctgata
aaaatcatcaaaaataagaaatttcaaaaaaatgcaagctattttgccttcactgctacg
cctaagccaaaaacgctagaaatgtttggaagtgcttgtgagataaatggggagaaaaaa
tttatcccttttcatctttactctatgaaacaagccatagaagagggctttatccttgat
gtgttaaaaggctatatcacttatgcaagttattataaaatcgtatctaaaaatgataat
agggaatatgataagaaaaaggcaaatgcaaagctaaaagcctatgtaacaaatcatatc
gcaacgattgaaaagaaagcaacaataatgatagagcatttttttcaaaatatttgtaaa
aaaatcggcgaaaaggcaaaggcgatgatcgttacaagttctagggaaaatgcggttaaa
tattatcttttctttagggagtatttgcaaaagaatcacccagagtatcaagctttagtg
gcattttcaggggataaggaaataaatggggaaagttatagcgaagtgaggcttaatggc
tttagcgaagctatgctgaaagatgagtttaaaaaggataattatcgctttttaattgtc
gcagaaaaatatcaaacaggctttgatgaaccacttttacatacaatgtatgtggataaa
cgcttagaggggataagtgcggtgcagacactctcacgcctgaatagaatctgtaaaaat
aaagaggatacttgtgtgctagactttgtcaatacacacgaggagattggcaaatctttt
agcactttttatgggcagacctatcttaaagagccgacaaatatcgataatatttacacg
cttaaaagtgagctatttgactatggaatttatacgcaagatgagttaaattcttttata
gaggcgattagaaaagagcaagatgaaaataaaatccactctaaacttgataatatgata
aaagaatataacgcaaaaagcgatgatgaaaagacaaagttttacacaaaagcaaaggtg
tatttaagggaatattcttttctagcacaaattttaccctttaatgatatagaacttgaa
aaattatctatcttgctaaaaatgcttatcgcaaaaatcgtcccaccacgcacggaggat
ttagcaaaggggatattaaataatgtagatttaaatagcatacgcataatacttgatagt
aaaaaggatataagccttagcagtaatggcgagttaagtccagcaggagctgatgactct
agcaagaaagaagtagagcttgaacgcttgtcaaacatcgttagggaatttaacactaaa
tttggtagtgtggattttgggacaaatgaaaagatagcaaaagaacttatggatttaaaa
gatgatattacaaaggagcagacttttagggattctttaggcgatgagcaaaatgcacgc
aggttatttgcggatatttttaaaattcaatatttacaattttttaagagaaacaaggat
ttttttacacagcttgataataaagaagaatttaaagaaagagtttctaatgtgatatat
gagatgattgatgagggttatcaatataatgcttttaaaagcttttaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (4)   
   Pfam (4)   
All databases (11)   

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