KEGG T06110: 107084909

Cyprinodon variegatus (sheepshead minnow): 107084909

Entry

107084909         CDS       T06110

Symbol

col11a1

Name

(RefSeq) collagen alpha-1(XI) chain

K19721

collagen type V/XI/XXIV/XXVII, alpha

Organism

cvg Cyprinodon variegatus (sheepshead minnow)

Pathway

cvg04820

Cytoskeleton in muscle cells

Brite

KEGG Orthology (KO) [BR:cvg00001]
09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    107084909 (col11a1)
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:cvg00536]
    107084909 (col11a1)
Glycosaminoglycan binding proteins [BR:cvg00536]
Heparan sulfate / Heparin
  Extracellular matrix molecules
   107084909 (col11a1)

SSDB

Motif

Pfam:

Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1

Other DBs

NCBI-GeneID:

107084909

NCBI-ProteinID:

XP_015230455

Position

Unknown

AA seq 1839 aa
MEMQRWSTRWKTKSLFMDSTITAFITLTLLLQAANVRAAEPVDVLNVLAFHNYPEGVSKT
TGFCANRRASKPDSAYRVSKQIQISAPTTQLFPGGVFPEDFSILTTVRPKSGLQSFLLSI
YNEQGVQQLGVEVGRSPVFLYEDQTGKPAPEDYPLFNSLNLANGKWHRVAISVEKNTVTI
IVDCKKKITKPLLRSDRASISTDGITVFGTRILEEEVFEGDIQQLLIVPDPKAAYDYCEH
YSPDCETPHKDSLQAQEPEEEYITDDLDYNQLYDYSEEPTETIPTDDEYLGSKLLQRNKR
SVPMKKKTTRKSPSKTKYQPSKYSAVKKSSVKMSVPKKRIFDYQATAPARPRGSSRLNNV
DGDYYTYTDFGNLDDTQTQSPVATSGPSQAVKEDLVGGYVTETPSIAPEPEAVVETVDNL
DTGAEAYDSKDYDLTDYDLGKFDSKLYDYGAYDEYGVLPSKSPPAYDEEVGPGVAAETDF
SESTGPGSEAVFGQKGEKGEPAVIEPGLPGRAGLPGADGLPGPPGTMLMLPFRFGGDGEK
GPVVSAQEAQAQAILSQARLAMRGPPGPMGLTGRSGPVGPPGQGGLKGESGDPGPQGPRG
IQGPPGQPGKIGKRGRAGADGARGMPGEPGSKGDRGFDGLPGLPGEKGHRGEPGRMGPPG
APGEDGQRGEDGEIGPRGLAGESGPRGLLGPRGPPGPPGVPGVAGVDGPPGPKGNMGPQG
EPGPPGQQGIPGTQGLPGPQGPIGPPGEKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKG
SQGPLGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGIKGDRGEIGMPG
ARGEDGPEGPKGRAGPNGESGPLGPAGEKGKLGVPGLPGYPGRQGPKGSSGFPGFPGANG
EKGARGIAGKPGPRGQRGPTGPRGARGARGPTGKPGLKGTAGNDGPPGPPGERGPQGPQG
PVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPVGERG
HPGPPGPPGEQGLPGAAGKEGAKGDPGPQGSSGKDGPPGLRGFPGERGLPGATGPAGLKG
GEGPQGPPGPVGSPGERGQAGPAGPIGLSGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDG
VQGPVGLPGPAGPQGPPGEDGDKGEAGEPGQKGSKGDKGEQGPPGPAGIQGPIGAPGPAG
SDGEPGPRGQQGMFGQKGDEGSRGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPG
PRGPQGPSGADGPQGPPGGVGPVGSVGEKGEQGEAGNPGPPGEPGTGGPKGERGEKGEAG
PPGAAGPAGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGVAGTDGEPGEKGEDGEPGQPG
PPGPSGEAGPPGPPGKRGPPGALGAEGRQGEKGAKGEAGAEGPAGKTGPVGPQGPPGKPG
PEGLRGIPGPVGEQGLPGAPGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG
EQGEKGDRGLPGPQGTPGGKGDAGISGAAGPLGPPGPPGLPGPQGPKGAKGSSGPAGPKG
DTGSIGPPGPPGPPGEVIQPLPIQSPKKTKRSSDTQSDATGFWDYGQGMEDIFGSLNNLK
QDIERMKYPMGTQNNPARTCKDLQLCHPEFSDGEYWIDPNQGCSGDSFKVYCNFTAGGET
CIYPDKKSNGVRLSSWPKDVPGSWFSEFKRGKLFSYVDADGNSINMVQMTFLKLLTASAR
QNFTYNCHQSVAWHDASSDSYDKALRFLGANDEEMSYDNNPYIQAISDGCSTRHGNGKTV
LEINTPKIDQVPIVDVMLTDFGDPNQKFGFEVGPVCFLG

NT seq 5520 nt +upstreamnt +downstreamnt
atggagatgcaaaggtggtccacaaggtggaagacgaaaagtctgtttatggattccact
ataactgcattcatcactttaacactgcttctgcaggctgctaatgtcagagcagcagag
ccagtggatgtcctaaatgtgttagcgtttcataattaccctgaaggagtatcaaaaaca
acgggattttgtgcaaaccgaagagcgtcgaagccggactcagcctacagagtttccaag
cagatccagatcagtgcccccaccacacagttattccctggtggtgtatttcctgaggat
ttctccatcctgaccacagtgcgccccaagtctggcctccagtccttcttgctgtctatt
tacaacgaacaaggagttcagcagctaggtgtggaagtgggacgctcacctgttttccta
tatgaggatcaaaccggcaagccagccccggaggactaccccctgttcaactctctcaac
ctcgctaatggaaagtggcaccgtgtggccatcagtgttgagaagaatactgtcaccatc
attgtagactgtaagaagaagatcactaagcctctgctaaggagtgaccgagcctccatc
agcaccgatggcatcactgtgtttggcaccaggattctggaagaggaggttttcgagggc
gacatccagcagcttctgattgttcctgatcccaaagcagcgtacgactactgtgaacat
tacagcccagactgtgaaactccgcacaaggattcacttcaggcacaggaaccagaggaa
gagtacattactgatgatttagattacaatcagttgtatgattactctgaagaaccaaca
gaaaccatcccaactgatgatgaatacctgggatcaaagcttttacagagaaacaaacgt
agtgtccccatgaaaaagaagacaaccagaaagtctcccagtaaaactaagtaccagcct
tcaaagtactcggctgtgaaaaaaagttcagttaaaatgtctgtacctaagaagaggata
tttgactaccaggccacagctcctgcacgacccagaggcagttctaggctaaacaatgta
gatggagattactatacatacactgacttcggaaatctagatgatactcaaactcagtcc
cctgttgccacgagcggaccaagccaggctgtaaaggaggatttggttggtgggtacgtc
acagagaccccttctattgctccggagcccgaagctgtagtggaaacagtggacaacctg
gacactggtgcagaagcttatgactctaaggactatgacctgaccgattatgacttgggc
aagtttgacagcaagttgtatgattatggagcatatgatgagtatggggtcctcccatct
aaatccccgccagcctatgatgaggaagtggggcctggggttgctgctgaaacagacttt
tctgaaagcacaggtcctggttctgaggctgtctttggacagaagggtgaaaaaggcgag
ccagctgtgattgaacctggtcttcctggtcgtgccggtcttcctggtgctgatggctta
ccaggaccaccaggtaccatgctgatgctcccatttcgctttggtggagatggtgagaag
ggtccggtggtgtcggcgcaagaagcccaagcacaggccatcctttcccaggccagactg
gctatgaggggacctccggggccaatgggcttgacaggaagatctggaccagtgggtcca
cctggacaaggtgggttgaaaggtgaaagtggagaccctggtcctcaggggccacgtggc
atccaaggacccccaggacaacctggcaaaattggaaaaagaggtcgggctggtgcagat
ggtgctcgaggaatgcctggagagccaggctctaagggtgaccgcggcttcgatggactc
cctggactccctggagaaaagggtcacaggggggagccggggcgaatgggaccaccagga
gccccaggagaggacggacagagaggcgaagatggagagattggtcccagaggattggct
ggagagagtggtcccagaggtttgctcggacctcgtggtcctccaggacctcccggagtg
ccaggcgttgccggagttgatggaccaccaggtcccaaaggaaacatgggcccacaaggg
gaaccaggcccacccggccagcaggggatccctggaacacaggggcttcctggtcctcaa
ggtccgatcggaccgcctggagaaaagggacctcagggcaggtcagggcttcctggatta
cctggagctgatggacctcctggtcatcccggtaaggagggtccacctggagaaaaaggt
tcacagggtccactgggtcctcaaggtcctattggttatcctggccctcggggtgtaaag
ggagctgatggggttcgtggtctaaagggatcaaaaggagagaagggtgaggacggtttt
ccaggttttaagggagacatgggaatcaaaggcgaccggggtgaaatcggtatgcctgga
gcccgtggagaggatggaccggaggggccgaaaggcagagctggcccaaacggagaatct
ggaccacttggtccagcaggagagaagggtaaacttggggtcccaggattgccaggttat
cctggacgacaaggacctaagggctccagtggatttcccggattccccggagcaaacggc
gaaaaaggagcaaggggcattgctggtaaacctgggcctagaggacaaagaggtccaacg
ggtcctcggggggctcgaggagccaggggtccaacaggcaaacctggtctcaagggcaca
gcgggaaacgacggcccccccggcccgcctggcgagagaggacctcaaggacctcagggt
ccagtgggctttcctggaccaaagggccctcctggaccacctggaaaggacgggcttcct
ggacacccaggacagcgtggagagacgggtttccaagggaaaactggcccacctggacca
ggaggtgttgtcgggcctcagggacccactggtgagaccggtcctgttggtgagagggga
catcccgggcccccaggcccacctggagagcaaggtcttcctggagctgctggcaaggag
ggagccaagggtgatcctggaccacaaggctcctctggtaaagacggtcccccaggcctt
cgcggcttccctggagaaagaggtctacctggagcaacgggcccggctggtctgaaggga
ggagaggggccccagggtccacctggtcctgttggttctcctggtgaaagaggtcaggct
ggtccagctggcccaattgggttgtctggtagacctggtcctcagggtcctccaggtcct
gctggggagaaaggagctcctggcgagaaaggacctcaaggtccagctggccgtgatggt
gtccaaggtcctgttggtctccctgggcccgctggaccccagggcccacccggagaggat
ggtgacaagggagaggctggagaaccaggacaaaaaggaagcaagggtgataagggagag
cagggtcctcctggaccagctggaatccaaggtcctattggggctcctggtcctgctgga
tctgatggagagcctggtcccagaggtcaacaggggatgtttggacagaagggagatgag
ggttcaagaggtttccctggaccccctggtcccattggtctgcagggacttcctggtcct
ccgggcgaaaagggagaaaatggcgatgttgggcccatgggtcctcctggtcctcctggt
cccagaggtcctcaaggccccagtggagctgatggtccacaaggtcctccaggtggtgtg
ggccccgtaggatcagtaggagagaagggtgaacaaggtgaggctggaaacccaggacca
cccggagagcctggaactgggggacctaaaggtgagagaggagaaaagggagaagcagga
ccccctggagctgctggacctgctggcgccaaaggaccccctggagatgatggtccgaag
ggcaaccctggacctgttggcttccctggagacccaggcccccctggagagccaggtgtt
gctggtactgatggagaaccaggagagaaaggagaggatggtgagcctggtcaaccagga
ccccctggtccatcaggagaggctggcccacctggtccacctggcaagagaggacctcct
ggagctcttggagcagagggcaggcaaggagaaaagggcgctaagggtgaagcaggtgct
gagggtcctgctggtaaaacgggacctgttggcccccaaggacctcctgggaagccaggt
ccagagggtctgcgcggaatccctggccctgttggtgaacaagggctgcccggtgcccca
ggacaggatggtccaccaggtccgatgggacctccaggtcttccaggcttgaaaggtgat
cctggctcgaaaggtgaaaagggtcacccaggtttgattggtctgattggaccccctgga
gagcaaggagagaaaggagatcgaggtcttcccgggccccagggtactcccggaggcaag
ggtgatgctggtattagtggagctgctggtcctctaggtcctcctggtccccctggtcta
cctggtcctcaaggtcctaagggagctaagggttcaagtggtcctgctggtccaaaggga
gacactggttcaattggtccccctggtcctcctggcccccctggtgaggttatccagcct
ctacccattcagtcacccaagaagaccaagcgctccagtgacacgcagtcagatgccact
ggcttctgggattatggccaaggcatggaggacatctttggctcactcaacaatctcaaa
caggacattgaacggatgaaataccccatgggaacacaaaacaacccagccagaacatgc
aaagacctccaactgtgccaccctgagttctccgatggggagtactggatcgatccaaac
caaggctgctctggagactctttcaaagtctactgtaacttcacagctgggggtgaaacc
tgcatttatccagataaaaaatccaatggagtcagactatcctcttggcctaaggatgtt
ccaggttcatggttcagtgaatttaagcgcggtaaattattttcctatgtagacgctgat
ggaaactcgatcaacatggtgcaaatgaccttcctcaaactactgacagcctcagccagg
caaaacttcacctacaactgccaccagtctgtggcatggcacgatgcgtccagcgacagc
tacgataaggcgctgcggttcctgggcgccaacgatgaggagatgtcttacgacaacaat
ccttacattcaggccatctcagatggatgttcgacacgacatggcaatggaaagactgta
ttggagatcaatactcccaaaattgatcaggttccaatcgtcgatgtcatgttgactgat
ttcggagacccgaaccagaagtttgggtttgaagtaggacctgtctgctttcttggataa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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