KEGG   Cyprinodon variegatus (sheepshead minnow): 107085268
Entry
107085268         CDS       T06110                                 
Symbol
casc3
Name
(RefSeq) protein CASC3
  KO
K14323  protein CASC3
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03013  Nucleocytoplasmic transport
cvg03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    107085268 (casc3)
   03015 mRNA surveillance pathway
    107085268 (casc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cvg03019]
    107085268 (casc3)
Messenger RNA biogenesis [BR:cvg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     107085268 (casc3)
SSDB
Motif
Pfam: Btz
Other DBs
NCBI-GeneID: 107085268
NCBI-ProteinID: XP_015230997
Ensembl: ENSCVAG00000014935
UniProt: A0A3Q2GKE8
Position
Unknown
AA seq 736 aa
MADRRRRRRRASQDSEDDDESGSGSDSGRSGSPATKARGREPDPAEVTVSRSEAKSDVES
ECESEDGAGEAVLSDYDSADPEENGSHSEGGEEEEEGFSEEEAPAAAGEPKPAAAAPTQD
EGDEEEGKGEEEEEEAGGVREEESKAEEKGNLAGERQSGDGQESTDDPETKAGGKPGQQL
DDDEDRKNPAYIPRKGLFFEHDVRGQTQEEERPKGRNRKLWKDEGRWEHDRFREEEQAPK
SREELIAIYGYDIRNGASGPGERAYRQRRPRQASPSRDKRWREGPRPARSWQNRAAPPSS
VPPPSSAFPPLSAAQRSSTSSRPPPARSRPPHHNQAHPSSHAEYRNNESNAPQVQHRERH
GPKAPLDPVGERGGASRGGRGPAGRGGSSVVIEEVSVSQSGEAEEDPRSVTAAQSPRRQE
QRGGADRAASDPALQPSAANPEASPPAERPVERKSYSLARRTRSRPADLGSKQASVEESA
AGGNTPSPAGGGGKNWAGEGDDAGQTGGGGVAELDQAVAQLNLARRNWSPNQTSFVRSEM
RGLPSPMHVTGGPPQFPNMEEMGVSSNRAKRYSSQRQRAVPEPAPPMHLGVMDGHYYEPI
SYQGPIYTHGEGPAPIPPQGMLVQPEMHIPHPGLHPHQSGAPITNPALYGAPPVSLSPGQ
PQQLLPPPFYPPPGVMPFQYPAMYPNPQGQSQVTYGGVTYYDTMQQQAQPKPSPPRRTSQ
PVTVKPPPPEVPFASE
NT seq 2211 nt   +upstreamnt  +downstreamnt
atggcggaccggcggcggaggaggaggcgcgcgtctcaggacagcgaggacgatgacgag
tccggctcgggttcggacagcgggaggtccggttctcctgcgacaaaggcccgaggccgc
gaacccgacccggccgaagtgacagttagccggtccgaggccaagagcgacgtagagtcc
gagtgtgagagcgaggacggcgccggagaagccgtcctgtccgactacgacagcgccgac
ccagaggagaacggctcccactccgagggaggggaagaggaagaggagggcttcagtgag
gaagaggctccggctgcagccggcgaacccaaacccgccgccgccgccccgacccaggat
gaaggagacgaggaagagggaaagggggaggaggaggaggaggaagcaggaggcgtcagg
gaggaggagagtaaagctgaggagaaagggaacctggcaggagagcggcagagcggagac
ggacaggagtcgaccgatgacccagaaaccaaggcgggggggaaaccgggtcagcagctg
gatgacgacgaggaccggaagaacccggcttacattcccaggaagggtctgttcttcgag
cacgacgtccgcgggcagactcaggaggaggagcggcccaaaggtcggaaccggaagctg
tggaaagacgagggccgctgggagcacgacaggttcagggaggaggagcaagcgccgaag
agccgcgaggagctcatcgccatctacggttacgacatccggaacggcgccagcggccct
ggagaacgagcgtaccgacagcgccgacccaggcaggcgtcccccagcagagacaagcgg
tggagggaggggccccgaccggcccggtcctggcagaaccgagccgctcctccttcgtct
gtccctccgccctcctctgcctttcctcccctctccgcggctcagcggagcagcacctcc
tccagaccgccccccgcccgcagcagacccccccaccacaaccaagcgcacccctcctct
cacgcggagtacaggaacaatgaatccaacgcacctcaggttcagcacagagagcggcac
ggtcccaaagctccgctggacccggtgggggagagaggcggggccagcagaggggggcgg
ggccctgcaggaagggggggttcttctgtggtcatcgaagaggtttctgtcagccaatca
ggcgaggcggaagaggatccgaggtcggtgacagcggctcagtcgccgagacgacaggag
cagaggggtggagccgacagagccgcctctgaccccgccctccagccttcagcagccaat
ccggaagcctctccccccgccgagcgtcccgtggaacgtaagtcctactccctggcccgc
aggactcgctcccggcccgcggacctgggtagcaagcaggcctcagtcgaggagtcggca
gccggggggaacacgccgtcccccgctggagggggagggaagaactgggcgggggagggc
gacgacgcgggtcagacgggagggggaggagtggcggagctggaccaggcggtggctcag
ctcaacctggcccgacggaactggagtccaaaccagacgtcgttcgttcgctccgagatg
agaggtctgcccagtccgatgcacgtcaccggcggcccgcctcagtttcccaacatggag
gagatgggcgtcagctccaaccgagccaagcggtactcctcccagcgccagagagccgtg
ccggaaccggcgccgcccatgcacctgggagtgatggacggccattactacgagcccata
tcgtaccagggaccaatctacacccacggggaaggccccgcccccatccccccgcagggc
atgctggtccagccggagatgcacatccctcatccgggtctccatccccaccaatcagga
gcccccatcactaaccccgccctctacggagcgccgcctgtgtctctgtcgccggggcaa
ccacagcagctcctgcctcctccgttctaccctccgccaggagtcatgcccttccagtac
ccggccatgtacccaaacccgcagggccagtcccaggtgacctacggcggcgtcacgtac
tacgacaccatgcagcagcaggcccagcccaaaccatcacccccccgccgcacctcccag
cccgtcaccgtcaaacccccccctccagaggttccgtttgcctcagagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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