KEGG   Cyprinodon variegatus (sheepshead minnow): 107090821
Entry
107090821         CDS       T06110                                 
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
  KO
K11367  chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cvg03021]
    107090821 (chd1)
   03036 Chromosome and associated proteins [BR:cvg03036]
    107090821 (chd1)
Transcription machinery [BR:cvg03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     107090821 (chd1)
Chromosome and associated proteins [BR:cvg03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     107090821 (chd1)
    SLIK complex
     107090821 (chd1)
SSDB
Motif
Pfam: SNF2-rel_dom CDH1_2_SANT_HL1 CHD1-like_C Helicase_C HDA2-3 ResIII DEAD CHDCT2 CutA1
Other DBs
NCBI-GeneID: 107090821
NCBI-ProteinID: XP_015239898
Position
Unknown
AA seq 1296 aa
MITDHPLIECNENESDGLDRPLLAGRSLEVWLQKQELDSDSKRVFIPHRGNSCILADEMG
LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREILLWAPKMNVVVYLGDISSRN
MIRTHEWMHVHNKRLKFNILLTTYEILLKDKSFLGGVNWAFIGVDEAHRLKNDDSLLYKT
MIDFKSSHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWEMFEEEHGKGRDSGYTSLHKE
LEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNYKALSKGTKGSTSGFL
NIMMELKKCCNHCYLIKPPDDNEALNKTEALQQLIRSSGKLVLLDKLLVRLKERGHRVLI
FSQMVRMLDILADYLKSKNFYFQRLDGSIKGEMRKQALDHFNAEGSEDFCFLLSTRAGGL
GINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVTKSSVEEDIIERAKKK
MVLDHLVIQRMDTTGKTVLHTGAAPSSSAPFSKEELSAILKFGAEELFKEPEGEEQEPQE
MDIDEILKRAETRENDPGPSTVGEELLSQFKVANFSMMDDEDLDIDSERSQRSWDDIIPE
EQRRRMEEEERQKELEEIYMLPRMRNCAKQISFNSDRRQSRNRRYSGSDSDSNSDRKRPK
KRGRPRTIPRENIKGFTDAEIRRFVKSYKKFGGPLERLDAIARDAELVDKSEHDLKRLAE
TVHNGCLRTLRENPCGPEKASAGRRGKVKGPTFRISGVQVNAKLVISHEEELAPLHKAIP
ADPEERKKYMIPCHSKAAHFDIDWGKEDDSSLLIGIYEYGYGSWEMIKMDPDLNLTHKLL
PDDPDKKPQAKQLQARADYLIKLLSKDLAKKEAQKQAGAANSRKRKPRRKISKALKSGKG
EEAMKSPSSDLTSDKRSEDENEFDLEKKMAGKAASKRSQGEEEEEEEEEEHQHDASSSEE
KDDKEREEKKEKADGCDLKDRREMKLFDPVQKQEDDEEKIEVKTEVRDRTKKASSAPSAA
ESLSVCEEAEELDQRTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDH
ITQCLKEYSHPDHIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRHENVQAVEQNTRS
AQSYKHADVERLKDSVHQDDSSRDSYSSERHPPSGRHHHHHHDGGRESHRKGGGESRKRA
YSSFSNGKDHRDHYRGDRYDGKHRKLEEQRSSREHRPDGKEDYRSAYHYHSDWLSDQRGA
AAVRSPRDERSPCDSPFDYSSDHKSTPEQMWSSRKT
NT seq 3891 nt   +upstreamnt  +downstreamnt
atgattactgaccaccctttgattgaatgcaatgaaaatgaaagcgacggactggaccgc
cctctgctggcgggtcggtccctggaggtctggctccagaaacaggagctggattcagac
tctaaacgcgtgtttatccctcatagaggcaacagctgcatcctggctgatgagatgggc
ctagggaagaccatccagaccatctccttcctaaactacctgttccatgagcaccagctc
tacgggcccttcctcctggtggtgccgctgtccactctgacctcctggcagagggagatc
ctgctctgggctccaaagatgaatgttgttgtttacctcggcgacatcagcagcaggaac
atgatccgaacacatgagtggatgcacgtccacaacaagaggctgaaattcaacatcctc
ctcacaacatatgaaattcttctaaaagacaagtccttcttaggcggcgttaactgggcc
ttcatcggggtggatgaagctcacaggctgaagaacgatgactctcttctctacaaaacc
atgatcgactttaagtccagccacaggctgctgatcacaggaacgcctctgcagaactcg
ctcaaagagctctggtccctgctgcacttcatcatgcctgaaaagtttcactcctgggag
atgtttgaggaggagcatggcaaaggacgagactctggatacaccagcctccacaaagag
ctggagcccttcttgctgcgccgcgtcaagaaggatgtggagaagtctctgccagctaaa
gtggagcagatcctccgggtggagatgagcgccatccagaagcagtactacaagtggatt
ctgaccaggaactacaaggctctgagcaaaggcaccaaaggcagcacgtctggcttcctg
aacatcatgatggagctgaagaagtgctgcaatcactgttacctcatcaaacctcccgat
gacaatgaagctctcaacaaaactgaagcgttacagcaactgatccgcagcagcgggaag
ctggtgcttctggacaaactgctggttcgtctgaaggagcgaggccacagagtcctgatc
ttctcccagatggtccggatgctggacattctggctgactatctgaagagcaagaatttc
tacttccagcgattagacggctccatcaaaggagagatgcggaagcaagctctggatcat
tttaacgccgagggttcagaggacttctgcttcctgttatctacacgtgccggtggactg
ggtatcaatctagcatcggctgatacggtggtgatctttgactctgattggaacccacag
aatgacctgcaagctcaggccagagcccaccggattggtcagaagagacaggtaaatatc
tatcgcctggtgacaaaaagctcagtggaagaagatatcattgagagggccaaaaagaaa
atggtgttagaccacctggtcattcaaaggatggacaccaccggaaaaactgtccttcat
acgggagctgcaccctcaagctctgcaccgttcagcaaagaggaactgtcggccatcctg
aagtttggagctgaagagctgttcaaagagccagaaggtgaagagcaggaacctcaggag
atggacatcgatgagatcctgaaaagagccgagaccagggagaacgatccgggaccgtcc
accgtaggagaggagctgctgtctcagttcaaggtcgccaacttctccatgatggatgac
gaagacctggatatcgactctgagcgaagtcagcggagctgggatgacatcatacccgaa
gaacagaggaggaggatggaggaggaggagagacagaaggagctggaagagatttacatg
ctaccacgcatgaggaactgtgccaagcagataagcttcaactctgacagacggcagagc
aggaacaggagatattcaggctcggacagcgactccaactcagaccgaaagagaccaaag
aaacgcgggcgaccccggaccattccacgggaaaacatcaaaggttttacagacgcagag
atccgcaggtttgtgaagagttacaagaagtttggaggccctctggaaaggctggacgcc
atcgcccgtgatgctgagctggtggataaatcggaacatgacctgaaacgcctggcagag
actgtccataacggatgtctgaggacactacgtgaaaacccctgtggtccagaaaaggcg
tcagcaggaagacgaggaaaagttaaaggtccgacgttccggatctctggggtccaggtg
aacgccaagctggtcatctcccatgaagaggaactggctcctcttcataaggccatcccc
gccgaccccgaggagagaaagaagtacatgatcccgtgtcactccaaggcggcgcacttt
gacatcgactgggggaaggaggacgactccagtctgctgattgggatctatgaatacggt
tacggcagctgggagatgatcaagatggaccccgacctcaacctcacacacaagctgtta
ccagatgatcctgacaagaagccgcaggccaagcagctccaagccagagccgactacctc
atcaagctactgagcaaggacctggccaagaaggaggcccagaagcaggctggagcggct
aactcacgcaagaggaaacccaggaggaaaatcagcaaagctctgaaatcaggaaagggc
gaggaagccatgaagagtccgtcttcagacctgacgtcagacaagaggtccgaggatgag
aacgagtttgatctggaaaagaagatggcaggaaaggctgcgagcaaacgcagtcaggga
gaggaggaggaggaggaggaggaggaggagcatcagcacgacgcttcctcatcagaagag
aaggatgacaaagagagggaggagaagaaggagaaggctgacggctgtgacctgaaggac
aggagagaaatgaagctttttgatcccgttcagaaacaggaggacgacgaagagaagatc
gaagtaaagactgaggtacgagatcggaccaagaaggcgtccagcgctcccagcgctgcg
gagagcctgtctgtgtgcgaggaggccgaggagctggaccagaggaccttcagcgtgtgt
aaggagaggatgcggccggtaaaagcggccttgaagcagctggaccgaccggagaaaggc
ctgtcggagcgcgagcagctggagcacaccaggcagtgcctgataaagattggagaccac
atcacccaatgtctgaaggagtactctcaccccgaccacatcaagcagtggagaaagaac
ctctggatctttgtctccaagttcacagagtttgacgcaagaaaactccacaaactctac
aaacacgccatcaagaagagacacgagaacgtccaggccgtggagcagaacactagaagc
gctcaaagctacaagcatgcagatgttgaacggctgaaggacagcgtccaccaggacgac
agcagcagagacagctacagctctgagcgccatccgccgtccggacgccaccatcaccac
caccatgacggcggcagagagtcccacaggaagggcggcggagaatccaggaagagagcc
tactcctccttcagcaacgggaaggaccaccgagaccactacagaggcgacagatacgac
ggtaaacacaggaagctggaagagcagcggagcagcagggaacaccggccggacgggaag
gaagactatcgctctgcctaccactaccactcagactggctgagcgatcagcgaggcgcc
gccgccgttcgctctcctcgagacgaacgctctccctgtgactctcccttcgactactcc
tctgaccataagagcacgccggagcagatgtggagcagcaggaagacatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system